Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0777 ATGAATTCAATAACCCTTTTAGGTCCAAAGATGGTCCACAAATTTTCCCattctttgattattttacGGAGATTATGTAACGATCCGTTTGATGGTGATGGGTTTGAATGCATTGAGGAGCCTTTGAAAAAACTAGGTTCAGATTATGATTCCACTGTGGATGAAAGGCTTCATTTGAACGAGGATTGGGGCTTTAACCAAAAGCAGTTTTCACTTAGAAAAGGGTTTTTAGAAACTGTTAAGTTAGATGCTAAGAGGGTCCTTGAGGTTCTCCGGCAAGACGGTCCCGGTCTTGATGCCAGGTTGGTTTTAGGTGAGTTGCATGTAAAGCCATCAGGGCTTCTTGTGAGGAAGGTTCTCTTTGGAGTTTTGAAGAACATAAATTGTGAGAATAAGACCAGGTGTGCAAAGCTGGCATATAAGTTTTTTGTGTGGTGCAGTCAGCAAGAGGGTTACCGGCACACTGCGAATGCCTATCACTTAGTTATGAACATATATGCTGAGTGTGAGGAGTTTAAGGCGTTGTGGAGGTTGGTTGatgagatgattgagaaaggGCTTCCGGCTACTGCTCGTACTTTCAATATCTTAATTCGTACTTGTGGTGAGGCGGGATTGGCTAAGAAATTGGTGGAGAGGTTCATAAAATCGAAGATGTTTAACTTTAGGCCTTTTAAGCACTCCTACAATGCAATCCTGCATGGTCTTCTTGTTTTAAACCAGTACAAGTTGATTGAGTGGGTTTATCAGCAGATGTTGCTTGACGGATTCTCTTCggatattttaacttataatattGTCATGTATGCCAAGTACAGACTTGGAAAGTTGGATCAGTTCCACAGACTGCTTGATGAGATGGGTAGAAATGGATTTTCTCCAGATTTTCATACCTTTAATATTCTTCTTCATGTTCTTGGCAAAGGGGACAAACCACTTGCAGCTCTCAATCTTTTAAATCACATGAGAGAGATGGGCATAGACCCAACTGTGCTTCATTTCACTACATTGATAGATGGACTCAGCAGAGCTGGGAATCTGGATgcttgcaaatatttttttgatgaaatgaTAAAGAATGGATGCACACCAGATGTGGTGGCTTACACTGTAATGATAACAGGATATGTAGTGGCTGGTGAGCTTGGGAAAGCACTGGAAATGTATCAAGATATGATTTCTAGAGAACAAATTCCAAATGTTTTTACATACAATTCCATAATACGGGGATTATGTATGGCAGGAAAATTTGATGAAGCGTGCTCAATGCTCAAGGAAATGGAGACCAAAGGTTGTAGTCCAAACTCTGTTGTCTATAATACATTAGTGAGCAGTTTGCGGAATGCTGGAAAGACTGCTGATGCTCATGAAGTGATAAGACAGATGACGGAGAAGGGGAAGTATGCCCACATACATTCAAGATTCAAAGGGCATAAGGCATAG 1443 0.3915 MNSITLLGPKMVHKFSHSLIILRRLCNDPFDGDGFECIEEPLKKLGSDYDSTVDERLHLNEDWGFNQKQFSLRKGFLETVKLDAKRVLEVLRQDGPGLDARLVLGELHVKPSGLLVRKVLFGVLKNINCENKTRCAKLAYKFFVWCSQQEGYRHTANAYHLVMNIYAECEEFKALWRLVDEMIEKGLPATARTFNILIRTCGEAGLAKKLVERFIKSKMFNFRPFKHSYNAILHGLLVLNQYKLIEWVYQQMLLDGFSSDILTYNIVMYAKYRLGKLDQFHRLLDEMGRNGFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIDPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNGCTPDVVAYTVMITGYVVAGELGKALEMYQDMISREQIPNVFTYNSIIRGLCMAGKFDEACSMLKEMETKGCSPNSVVYNTLVSSLRNAGKTADAHEVIRQMTEKGKYAHIHSRFKGHKA 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0777 480 Gene3D Tetratricopeptide repeat domain 354 479 IPR011990 GO:0005515
Ssu7g0777 480 Pfam PPR repeat family 260 306 IPR002885 -
Ssu7g0777 480 Pfam PPR repeat family 329 376 IPR002885 -
Ssu7g0777 480 Pfam PPR repeat family 399 446 IPR002885 -
Ssu7g0777 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Ssu7g0777 480 PANTHER OS10G0506000 PROTEIN 1 479 - -
Ssu7g0777 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Ssu7g0777 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Ssu7g0777 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Ssu7g0777 480 Pfam PPR repeat 228 257 IPR002885 -
Ssu7g0777 480 Gene3D Tetratricopeptide repeat domain 113 237 IPR011990 GO:0005515
Ssu7g0777 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Ssu7g0777 480 TIGRFAM PPR: pentatricopeptide repeat domain 367 400 IPR002885 -
Ssu7g0777 480 TIGRFAM PPR: pentatricopeptide repeat domain 297 330 IPR002885 -
Ssu7g0777 480 TIGRFAM PPR: pentatricopeptide repeat domain 402 436 IPR002885 -
Ssu7g0777 480 TIGRFAM PPR: pentatricopeptide repeat domain 334 366 IPR002885 -
Ssu7g0777 480 TIGRFAM PPR: pentatricopeptide repeat domain 263 295 IPR002885 -
Ssu7g0777 480 TIGRFAM PPR: pentatricopeptide repeat domain 437 466 IPR002885 -
Ssu7g0777 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Ssu7g0777 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Ssu7g0777 480 Gene3D Tetratricopeptide repeat domain 239 353 IPR011990 GO:0005515
Ssu7g0777 480 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 479 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0777 228 473 Glycosyltransferase AT1G05670 30.894 2.32e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0777 - - gmx:100792512 922.154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0777 7 15649483 15650925 Ssu7g0777 7 15649483 15650925 ECH