Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0768 ATGGGAAAGCAAAAGCAACAAGTCATTTCCCGCTTCTTCGCTCCCAAACCCAAATCTCCTCCACCAACCACCCATTCACCTCCTCCTCCGACTGCTTCTTCTCCTCCCCGTCCCAACCCTCCCACTCCCAAAATCTCAGCCACCGTCACTTTCTCCCCCTCCAAACGCCGCCTAGCTTCCCACCTCACACGCCCTCGCAAACTCCAGAAGCTTCTCGAACCTTCTCCCCCCTCCCTCCACCGACGCTTCCTCCACAAGCTTCTCGAACCTTCCTCCCCGCAACAACCCCCTCCCTCTTCCAAACCCCCAACCTACACTCCCCTCGAGCTACAAGTCCTGGACCTCAAGGCCAAGCACCCCGACGTTCTTTTAATGGTCGAAGTCGGTTACAAGTACCGTTTCTTCGGCCTAGACGCCGAACACGCCGCTAGAGTCTTAGGCATCTACGCCCACGTCGATCACAATTTCTTGACCGCGAGCATACCAACTTTTCGACTGAATGTCCACGTGAGGAGGCTCGTGAGCGCGGGCTACAAGGTCGGCGTGGTCAAGCAGACCGAGACCGCCGCCATCAAGGCCCACGGTTCCAACCGGGTGGGCCCGTTCTGCCGCGGGCTGTCGGCGCTATACACGAAGGCCACGCTCGAGGCGGCGCCGGACCTGGGGGGAGGGGAGGACGGGTGCGGGGGAGAGAGCAATTACTTGCTCTGTGTGGTGGAGAAGAGTGTTTTGGGTGAGAAGGGGAATTGCGGGGTGGGGAGCGGGTTTGATGTGAGGGTTGGGATTGTTGCTGTGGAGATTTCAACTGGGGATGTTGTTTATGGGGAGTTTAGGGATAATTTCTTGAGGAGTGCGCTTGAGGCTGTTGTTCTGAGCTTGTCTCCGGCTGAGTTGCTTCTTGGGGACCCTCTCTCAAAACAAACAGAGAAGTTATTGCTGGATTTTGCTGGACCTGCCTCAAATGTTCGTGTGGAGCATATTTCACGAGATTGCTTCACTGATGGTGGTGCTCTTGCTGAAGTAATGACCTTGTACGAGAACATGCGTGTAGACAGTCCATCAGATTCAATGCAAAACAATGATTCAACTGAGAACAGAAGTCAGCAGTTAGTAATCAAGgagGTGATGAACATGCCAGATTTGGCTGTCCAAGCTTTAGCCTTAACTATTCGCCATTTAAAGGAATTTGGCTTTGAAAGAATTCTGTGTTCGGGAGCTTCTTTAAGGCCCTTCTCAAGCAATACGGAAATGACCCTCTCAGCCAATGCACTTCAACAACTGGAGgttttaaaaaataacagtgaTGGATCTGAGATTGGTTCCTTGCTGCAAATTATGAATCGTACTCTTACTATATTTGGTTCCAGGCTTCTTAGGCATTGGGTATCTCACCCATTGTGTGATCAAACTTTAATTTCTGCTCGTCTTCATGCTGTATCTGAAATTGCAGAGTCCATGGGATCTTGTAATAGTATGAAGAATGTTGGACTCATCGAGGAAGGGCCTGACGTAGCAATCGTGCAACCTGAGTTAGCATACATACTTTCACTGGTTTTGACAACTCTTGGCCGAGCACCTGATATACAACGTGGAATTACAAGAATTTTCCATTGCACTGCTACCCCATCTGAGTTCGTTGCAGTAATTCAAGCTATTTTGTCTGCTGGAAAACAGCTTCAACAACTTAACATAGGAGAGGGGAATAATAATACATTGCGCTCTAATCTgttaaaaaggttaattttgACTGCTTCCTCTGGCAGTGTTATTGGCAATGCTGCAAAAATGTTGTCATCTTTAAACAAAGACTCTGCTGATCAAGGAGATCTAACAAAATTGATCATTGCATCAGAGGGACAATTCCCAGAGGTCATTAGAGCCCAGAAGGCTTTCAAGCTGGCAGTGGAGCAATTAGATTCGTTGATTGACTTGTATCGCAAACTACTTGGAATGcgaaatttgaaattcatgaGCATTTCTGGAACAACTCATTTGATCGAGTTATCAACTGATGTAAAGGTTCCTTCAAACTGGGTCAAGGTAAATAGCACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTATTAACAGCATTGGACAAGTTATCATTAGCAAAAGAGGAGCTCTCTGTTGCCTGCCGAGCTGCCTGGAATAGCTTTCTTACTGACTTCAGTAAACACTATGCTGAGTTCCAAGCTGCTGTTCAAGCACTAGCTGCTTTAGATTGTCTGCATTCACTTGCCATTCTTTCCAGAAATAAGGGTTATGTTCGCCCAGGGTTTGTAGATGATCATGAGCCTGTTCAGATACAAATTTGTTCTGGTAGACATCCGGTTTTGGAGACTACCTTACAAGACAATTTTGTTCCAAATGATACAAACATGCATGCGGATGGAGAGTACTGTCAGATTGTTACTGGACCAAATATGGGGGGGAAAAGTTGCTATGTTCGCCAGGTGGCTCTGATTGCTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTGCATGTCCTGGATGGGATCTACACCCGGATGGGTGCTTCTGACAGTATTCAACAAGGGAGAAGCACCTTCCTAGAAGAACTAAGTGAGACTTCACATATACTCCATAGCTGCACGGAACACTCGCTGGTTATCATTGATGAGCTTGGGAGAGGTACAAGTACACATGATGGTATGGCCATTGCTCATGCGACGTTGCATTATCTTTTGAAGCAAAAAAGAAGCATGGTCCTCTTTGTCACTCACTATCCAAAGATTGCCAACCTGGCAACTGAATTTCCTAGCTCTGTGGCAGCATATCACGTGTCACATCTGACCTCACATGATGCAAGTAAAAATTCCAACTTGGATCATGATGTCACTTATCTATACAAGCTCGTACCTGGTGTTTCCGAGAGGAGTTTTGGGTTTAAGGTTGCCCAGCTTGCACAGTTACCATCACATTGCATCAGTCGAGCCATTGTCATGGCTTCCAAATTAGAAGCACTAGTAAACAGTAGAATACATAGTAGATCGAGGAAGGAGCTGCTATTGGATACGCTGGTGATCGGTCAAGAGCAAGAACAGCTTATGGCTCAACCACATGATCGTCCACATCAAGAGTTTGGTATAGCTTACAAAGATctctatttaaacttaaaagctGCAATACAAGATGATGACTGTGCAAAAAGCTTTCACCTTTTGGAACATGCTAGAAGCAttgcaaagaaaataattggCAGATCAATGCAGTAA 3255 0.4571 MGKQKQQVISRFFAPKPKSPPPTTHSPPPPTASSPPRPNPPTPKISATVTFSPSKRRLASHLTRPRKLQKLLEPSPPSLHRRFLHKLLEPSSPQQPPPSSKPPTYTPLELQVLDLKAKHPDVLLMVEVGYKYRFFGLDAEHAARVLGIYAHVDHNFLTASIPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNRVGPFCRGLSALYTKATLEAAPDLGGGEDGCGGESNYLLCVVEKSVLGEKGNCGVGSGFDVRVGIVAVEISTGDVVYGEFRDNFLRSALEAVVLSLSPAELLLGDPLSKQTEKLLLDFAGPASNVRVEHISRDCFTDGGALAEVMTLYENMRVDSPSDSMQNNDSTENRSQQLVIKEVMNMPDLAVQALALTIRHLKEFGFERILCSGASLRPFSSNTEMTLSANALQQLEVLKNNSDGSEIGSLLQIMNRTLTIFGSRLLRHWVSHPLCDQTLISARLHAVSEIAESMGSCNSMKNVGLIEEGPDVAIVQPELAYILSLVLTTLGRAPDIQRGITRIFHCTATPSEFVAVIQAILSAGKQLQQLNIGEGNNNTLRSNLLKRLILTASSGSVIGNAAKMLSSLNKDSADQGDLTKLIIASEGQFPEVIRAQKAFKLAVEQLDSLIDLYRKLLGMRNLKFMSISGTTHLIELSTDVKVPSNWVKVNSTKKTIRYHPPEVLTALDKLSLAKEELSVACRAAWNSFLTDFSKHYAEFQAAVQALAALDCLHSLAILSRNKGYVRPGFVDDHEPVQIQICSGRHPVLETTLQDNFVPNDTNMHADGEYCQIVTGPNMGGKSCYVRQVALIAIMAQVGSFVPASSAKLHVLDGIYTRMGASDSIQQGRSTFLEELSETSHILHSCTEHSLVIIDELGRGTSTHDGMAIAHATLHYLLKQKRSMVLFVTHYPKIANLATEFPSSVAAYHVSHLTSHDASKNSNLDHDVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEALVNSRIHSRSRKELLLDTLVIGQEQEQLMAQPHDRPHQEFGIAYKDLYLNLKAAIQDDDCAKSFHLLEHARSIAKKIIGRSMQ 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0768 1084 SMART mutATP5 800 997 IPR000432 GO:0005524|GO:0006298|GO:0030983
Ssu7g0768 1084 Gene3D MutS, connector domain 229 416 IPR036678 GO:0005524|GO:0006298|GO:0030983
Ssu7g0768 1084 SUPERFAMILY DNA repair protein MutS, domain I 98 214 IPR016151 GO:0005524|GO:0006298|GO:0030983
Ssu7g0768 1084 Pfam MutS domain II 233 395 IPR007860 GO:0005524|GO:0006298|GO:0030983
Ssu7g0768 1084 Pfam MutS domain I 106 216 IPR007695 GO:0005524|GO:0006298|GO:0030983
Ssu7g0768 1084 Gene3D DNA repair protein MutS, domain I 98 220 IPR016151 GO:0005524|GO:0006298|GO:0030983
Ssu7g0768 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 756 1000 IPR027417 -
Ssu7g0768 1084 ProSitePatterns DNA mismatch repair proteins mutS family signature. 881 897 IPR000432 GO:0005524|GO:0006298|GO:0030983
Ssu7g0768 1084 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 81 1078 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Ssu7g0768 1084 SMART DNAend 437 783 IPR007696 GO:0005524|GO:0006298|GO:0030983
Ssu7g0768 1084 MobiDBLite consensus disorder prediction 15 43 - -
Ssu7g0768 1084 Pfam MutS domain V 803 1000 IPR000432 GO:0005524|GO:0006298|GO:0030983
Ssu7g0768 1084 Pfam MutS domain III 422 748 IPR007696 GO:0005524|GO:0006298|GO:0030983
Ssu7g0768 1084 Gene3D - 598 724 - -
Ssu7g0768 1084 Gene3D - 419 748 - -
Ssu7g0768 1084 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 81 1078 - -
Ssu7g0768 1084 SUPERFAMILY DNA repair protein MutS, domain III 421 753 IPR036187 -
Ssu7g0768 1084 PIRSF Msh6 97 1040 IPR017261 GO:0006298|GO:0030983
Ssu7g0768 1084 MobiDBLite consensus disorder prediction 1 76 - -
Ssu7g0768 1084 Gene3D - 756 1032 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0768 Ssu-Chr7 15498812 15506942 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0768 K08736 - gmx:100789883 1817.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0768 7 15498812 15506942 Ssu7g0768 7 15498812 15506942 ECH