Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0758 ATGAGGACAAgtaaaagagaagaagagaggaagagaagAAGAAAGGTGGGAAATTCATTTGAATGTTCAGCCTTCGGCGAGAGGCTGGTGTCGGCGGTGAGGGACGAGGACTTGGTGGAGATTGTGGCATTGTTGCTGGAGAATGAGGCTGATGTGAATTCCAGAAATTATTGTGGGCAGACGACCTTGATGCAAGCTTATGGATATAGGCATTGGGATGTTGTACAGACACTTCTACTCTTCAAATGCAATGTTGCGAGAGTTGATTATCTTTGTGGGAGGACAACTTTTCACTTTGCAGCTGTGCATGGGCATGTAAGATGTATTAGAATTGTTGTGGCTGACTTTAGTTGTCATTTGTGTCTGTCCAAGTTTGTAAATAAGACTGCTGACGGTGGTAATACTGCCCATCATATGGCTGCATTAAATGGGTACTTTGATTGTGTACAATTGCTGCTTGATCTTAATGCAAATGTGTCTGTTGTGACATTTCATTACGGAACATCGATGGATTTAATAGATCCTTATTGCACAAGGTGCAAGTCGGATGGCTTTAAATTGCAATGGGGGCGTCATTGGCTTGAACAATTGCTGGCACCCAGCTCTAATACCATAATACCTACATTCCCTCATTCAAATTACTTGTCCTTGCCTCTTATAAGTGCACTCAACATAGCTAGAGAGTATGGATTGCAATCATCTACAACCTCCTTTATTGAGATTGACTTTTGTGTTGTATGCTTGGAGAGGCCATGTTTAGTGGCTGTAGAAGATCAGCCATCCTTTTCTCATACACCAGAGATTGGAAGAAATCATATAGCTTCTGTTCCTTTGGAGATACTTTGTCTCGTCACTTGTAGTCCATTTCCATCTATGACAATTCCGCTATGTACTTGCAATGATGGTCCATGTCCATCATTTGAACCCCGAGAAGTAGAAACACAAGATGAATCACCTTATCACTCTCAAGCATCAACAATGGATCAAGATCAAATTGAAGGGCCAAGTCTGGATAAAACAACCTGCTCTAGCATGTTTGGGGTAGAATAA 1050 0.4067 MRTSKREEERKRRRKVGNSFECSAFGERLVSAVRDEDLVEIVALLLENEADVNSRNYCGQTTLMQAYGYRHWDVVQTLLLFKCNVARVDYLCGRTTFHFAAVHGHVRCIRIVVADFSCHLCLSKFVNKTADGGNTAHHMAALNGYFDCVQLLLDLNANVSVVTFHYGTSMDLIDPYCTRCKSDGFKLQWGRHWLEQLLAPSSNTIIPTFPHSNYLSLPLISALNIAREYGLQSSTTSFIEIDFCVVCLERPCLVAVEDQPSFSHTPEIGRNHIASVPLEILCLVTCSPFPSMTIPLCTCNDGPCPSFEPREVETQDESPYHSQASTMDQDQIEGPSLDKTTCSSMFGVE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0758 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 258 346 - -
Ssu7g0758 349 PANTHER HOMEOBOX PROTEIN WARIAI 16 40 - -
Ssu7g0758 349 PANTHER HOMEOBOX PROTEIN WARIAI 121 176 - -
Ssu7g0758 349 MobiDBLite consensus disorder prediction 310 349 - -
Ssu7g0758 349 SMART ANK_2a 92 120 IPR002110 GO:0005515
Ssu7g0758 349 SMART ANK_2a 58 87 IPR002110 GO:0005515
Ssu7g0758 349 SMART ANK_2a 132 161 IPR002110 GO:0005515
Ssu7g0758 349 Gene3D - 2 202 IPR036770 -
Ssu7g0758 349 ProSiteProfiles Ankyrin repeat profile. 132 164 IPR002110 GO:0005515
Ssu7g0758 349 MobiDBLite consensus disorder prediction 318 349 - -
Ssu7g0758 349 PANTHER HOMEOBOX PROTEIN WARIAI 188 257 - -
Ssu7g0758 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 16 40 - -
Ssu7g0758 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 121 176 - -
Ssu7g0758 349 SUPERFAMILY Ankyrin repeat 39 167 IPR036770 -
Ssu7g0758 349 Pfam Ankyrin repeats (3 copies) 64 160 IPR002110 GO:0005515
Ssu7g0758 349 ProSiteProfiles Ankyrin repeat region circular profile. 132 161 - -
Ssu7g0758 349 PANTHER HOMEOBOX PROTEIN WARIAI 40 117 - -
Ssu7g0758 349 PANTHER HOMEOBOX PROTEIN WARIAI 258 346 - -
Ssu7g0758 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 188 257 - -
Ssu7g0758 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 40 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0758 Ssu-Chr7 15228229 15232638 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0758 13 154 Miscellaneous Gene Families AT5G60070 28.667 2.64e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0758 K19044 - gmx:100793886 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0758 7 15228229 15232638 Ssu7g0758 7 15228229 15232638 ECH
Ssu7g0758 7 15228229 15232638 Ssu7g0758 7 15228229 15232638 PCT