Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0730 ATGAATAAGGTTGGGCAATCTCTAAAATGGCTTCTCTTGGATTTGATTCACAAGTGCAAGGACTTGAGATCCTTCAAGCAAATCCATGCGCATCTATTGACTTCTGCCCTTGTTGCCAATGACTTGGTTGTCACCAAAGCAGCAAACTTTTTGGGAAAACATGTCACTGATGTTCATTACCCTTGCAATTTCCTGAAGCAATTTGATTGGAGCCTGAGCTCTTTCCCTTGCAATATGCTGATTTCTGGCTATGCTTCTGGCCGCTTACCCTGGCTTGCAATCCTGATTTATAGATGGACTGTTAGGACTGGTTTTGTGCCTGATGTGTACACTGTCCCAGCTGTTTTGAAATCTTGTGCTAAGTTTTCTGGGATTGGAGAGGTTAGACAGTTTCATTCAGTGGCTGTTAAGACTGGCTTGTGGTGTGACATTTATGTGCAAAACACTCTTGTCCATGTTTATAGCATCAGTGGGGACACTGTTGGTGCCGGCAAGGTGTTTGATGACATGCTTGTGAGAGATGTGGTCTCTTGGACTGGTTTGATATCTGGGTATGTGAAGGCTGGGTTGTTTAATGATGCCATTGCATTGTTTTTGAGAATGGATGTGGAGCCTAATGTGGCAACTTTTGTCAGCATTCTTGGGGCTTGTGGGAAATTGGGTTGTTTAAATTTGGGGAAGGGGATTCATGGGTTGGTTTTGAAATGTCTGTATGGGGAGGAGTTGGTGGTATGCAATGCTGTGTTGGATATGTATATGAAGTGTGAATCTGTGACTGATGCAAGGCAAATTTTTGATGAGATACCTGAGAAAGATATTATTTCTTGGACTAGTATGATAGGTGGATTAGTGCAGTGCCAGTGTCCCAGGGAATCACTGGACTTGTTCTGTCAAATGCAGGGCTCAGGTTTTGAGCCTGATGGGGTTATACTGACTAGTGTGCTTTCTGCTTGTGCCAGTCTTGGGCTTCTTGATTATGGCAGATGGGTTCATGAATACATTGATCATCGCTGTATCAAGTGGGATGTTCATATAGGAACAGCATTGGTTGACATGTATGCAAAATGTGGTTGTATAGAGATGGCGCAGCGTATCTGCAGCGGAATGCCTTCTAAGAATATCCGTACTTGGAATGCCTATATAGGTGGTCTAGCAATAAATGGATATGGGAGGGAAGCATTGAAACGATTTAAAGATTTGATTGAGTCTGGCACAAGGCCTAATGAGGTGACATTTCTAGCTGTTTTTACGGCTTGCTGCCATTCTGGTTTGGTTGATGAAGGCCGGAAGTATTTCAACAAGATGACAAGTCCCCACTACAATCTTTCTCCCTGGTTAGAACACTATGGATGCATGGTTGATTTGTTCTGCAGGGCTGGACTGGTGGGGGAAGCTGTGGAGTTGATAAAGACAATGCCCATGCCCCCGGATGTGCAGATCCTAGGAGCTCTTTTGAGTGCCTGCAATACATATGGGAATGTTGGATTCACCCAAGAAATGTTGAAATCACTGCAGAATTTTGAATTCCAAGATAGTGGCATATATGTGCTTCTTTCTAATCTGTATGCAACTGACAAGAAATGGGCTGAAGTGAGAAGTGTTAGGAGACTGATGAAGCAGAAAGGAATAAGCAAGGCTCCAGGTTCTAGCCTTATAAGGGTGGACGGTAAGAGTCATGAATTTTTAGTTGGAGGTAATAACCATCCTCAAAGTGAGGATATTTACGTACTATTAAACATCCTTGGCAATCAAATCAACCTTGAGGGGCATATTAATACCCTTTCTTGA 1788 0.4312 MNKVGQSLKWLLLDLIHKCKDLRSFKQIHAHLLTSALVANDLVVTKAANFLGKHVTDVHYPCNFLKQFDWSLSSFPCNMLISGYASGRLPWLAILIYRWTVRTGFVPDVYTVPAVLKSCAKFSGIGEVRQFHSVAVKTGLWCDIYVQNTLVHVYSISGDTVGAGKVFDDMLVRDVVSWTGLISGYVKAGLFNDAIALFLRMDVEPNVATFVSILGACGKLGCLNLGKGIHGLVLKCLYGEELVVCNAVLDMYMKCESVTDARQIFDEIPEKDIISWTSMIGGLVQCQCPRESLDLFCQMQGSGFEPDGVILTSVLSACASLGLLDYGRWVHEYIDHRCIKWDVHIGTALVDMYAKCGCIEMAQRICSGMPSKNIRTWNAYIGGLAINGYGREALKRFKDLIESGTRPNEVTFLAVFTACCHSGLVDEGRKYFNKMTSPHYNLSPWLEHYGCMVDLFCRAGLVGEAVELIKTMPMPPDVQILGALLSACNTYGNVGFTQEMLKSLQNFEFQDSGIYVLLSNLYATDKKWAEVRSVRRLMKQKGISKAPGSSLIRVDGKSHEFLVGGNNHPQSEDIYVLLNILGNQINLEGHINTLS 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0730 595 Pfam PPR repeat family 372 421 IPR002885 -
Ssu7g0730 595 PANTHER OS04G0488200 PROTEIN 192 256 - -
Ssu7g0730 595 PANTHER OS04G0488200 PROTEIN 257 589 - -
Ssu7g0730 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 204 IPR002885 -
Ssu7g0730 595 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 192 256 - -
Ssu7g0730 595 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 257 589 - -
Ssu7g0730 595 PANTHER OS04G0488200 PROTEIN 6 192 - -
Ssu7g0730 595 Pfam PPR repeat 448 472 IPR002885 -
Ssu7g0730 595 Pfam PPR repeat 243 273 IPR002885 -
Ssu7g0730 595 Pfam PPR repeat 148 174 IPR002885 -
Ssu7g0730 595 Pfam PPR repeat 176 201 IPR002885 -
Ssu7g0730 595 Pfam PPR repeat 274 304 IPR002885 -
Ssu7g0730 595 Gene3D Tetratricopeptide repeat domain 236 328 IPR011990 GO:0005515
Ssu7g0730 595 Gene3D Tetratricopeptide repeat domain 350 560 IPR011990 GO:0005515
Ssu7g0730 595 Gene3D Tetratricopeptide repeat domain 74 235 IPR011990 GO:0005515
Ssu7g0730 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Ssu7g0730 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Ssu7g0730 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Ssu7g0730 595 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 192 - -
Ssu7g0730 595 Pfam E motif 491 552 IPR046848 -
Ssu7g0730 595 TIGRFAM PPR: pentatricopeptide repeat domain 176 202 IPR002885 -
Ssu7g0730 595 TIGRFAM PPR: pentatricopeptide repeat domain 376 409 IPR002885 -
Ssu7g0730 595 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0730 Ssu-Chr7 14715495 14717282 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0730 89 591 Glycoside Hydrolase AT3G49170 34.442 1.96e-97 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0730 - - ccaj:109794299 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0730 7 14715495 14717282 Ssu7g0730 7 14715495 14717282 ECH