Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0547 ATGATGAAAAACTTCAACACAGCACTTATATTCTTCATTGGGTTTGTTTCCTCAAGTCTGTTTCAAGTTTCAGTTGCATCTGTTGTTTCAACAGGAGACTTCAATAAGGACTTCTTTGTGATATGGTCTCCTACCCATGTGAACACATCTGCTGATGGACAGACAAGAAGCTTGAAACTGGACCAAGAATCTGGAGCTGGTTTTGCTTCAAACCAGATGTTTTTATTTGGGCAAATTGACATGCAAATCAAACTAGTGCCAGGTGATTCTGCAGGCACTGTCCTGGCCTATTATcTTACCTCCGATCAACCTAATCGAGATGAGATAGACTTTGAGTTTCTAGGCAACGTCTCTGGGCAGCCATATATTctacaaacaaatattttcgCAGATGGAACTCACAGTCGAGAGGAGAGAATTTATCTGTGGTTTGATCCAACAAAGGACTTCCATACTTATTCTGTGTTGTGGAATCTGCACCAGATTGTGTTAATGGTGGATATGATTCCTATAAGAGTGTATAGAAACCACGCGGACAAGGGTGTACCATTTCCTAGATGGCAACCAATGAGTCTGAAAGCGACCCTGTGGAATGGTGATAGCTGGGCAACACGAGGAGGCCAAGATAAGATTGATTGGACAAAGGGTCCCTTCATAGCTTCATTAAGAAATTACAAGATTGATGCTTGTGTGTGGAAAGGGAACCCAAGGTTTTGCAGAGCAGCTAGCCCTACCAATTGGTGGAACCAATACAGCTTTAGTACACTTACGTCCACACAAAGAAGGTGGTTCAAATGGGTCAGGAAATACCACATGATTTATGATTATTGCCGAGACAATGAGAGGTTCCAAAACAATCTTCCAAGGGAATGTTCTCTTCCCAAGTATTGA 891 0.413 MMKNFNTALIFFIGFVSSSLFQVSVASVVSTGDFNKDFFVIWSPTHVNTSADGQTRSLKLDQESGAGFASNQMFLFGQIDMQIKLVPGDSAGTVLAYYLTSDQPNRDEIDFEFLGNVSGQPYILQTNIFADGTHSREERIYLWFDPTKDFHTYSVLWNLHQIVLMVDMIPIRVYRNHADKGVPFPRWQPMSLKATLWNGDSWATRGGQDKIDWTKGPFIASLRNYKIDACVWKGNPRFCRAASPTNWWNQYSFSTLTSTQRRWFKWVRKYHMIYDYCRDNERFQNNLPRECSLPKY 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0547 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 7 294 IPR044791 GO:0004553
Ssu7g0547 296 Pfam Glycosyl hydrolases family 16 35 215 IPR000757 GO:0004553|GO:0005975
Ssu7g0547 296 PIRSF EndGlu_transf 1 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
Ssu7g0547 296 ProSitePatterns Glycosyl hydrolases family 16 active sites. 108 118 IPR008263 GO:0004553|GO:0005975
Ssu7g0547 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 10-RELATED 7 294 - -
Ssu7g0547 296 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 294 IPR013320 -
Ssu7g0547 296 CDD GH16_XET 30 291 IPR016455 GO:0010411|GO:0016762|GO:0042546
Ssu7g0547 296 Gene3D - 20 295 - -
Ssu7g0547 296 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 243 291 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Ssu7g0547 296 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 9 222 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0547 Ssu-Chr7 10102038 10103378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0547 58 296 Glycoside Hydrolase AT2G14620 69.874 1.20e-132 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0547 K08235 - gmx:100793169 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0547 7 10102038 10103378 Ssu7g0547 7 10102038 10103378 ECH