Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0534 ATGTTGCAAACCCTAGGAGGCGTTAGCATCCGCTTCGTGAATCGGTCATGGCTCCAAAGCATGACGATGCGTGCTTTCTGTTCCTCCTCGGATTATGGAGACCAGTCACGTGGTGGCCTTCCCCGCTTCTACTCCGAAACTCTTCCTCCTTCCAAGGGTAGTGTTATCCGCATGCAAGGTGATGAATTCTGGCATATGACAAAAGTATTGAGGTTGAGCACCAATGATAgGGTACAGCTCTTCAATGGGAAAGGAGGTCTGGTAGAAGGATGCATACAGAACATTGACCGTACTGGGCTTGATTTTGTTGCATTGaatgatttgataataatacCTGCACAAAATACGCAATTGCATGTATTGGCTGGTTTTGGTACTCTAAAAGGTGGCCGTGCTGACTGGCTTGTAGAAAAGTGCACAGAACTTGGAGCCAATAGTGTAACTCCTCTATTGACTGAACGTTCTCCATCAATCTCAGAAAATCGGGTGGACAGATTGGAACGTGTCATTTTAGCAGCATCCAAacaatGTCAACGACTGCATGAAATGGTCCTGAAACATCCTATAAAGATTGATGACCTTTTGCACCTTATTGCACAATCAAAGCTATCTCTTGTTGCAACAGCAAAGGCAACTCCTGTTCTTAGTGCATTGACGTCATTGGAAAAGGAAACTGGTGGCTTAATCATAATTGGACCAGAAGGCGACTTCACTGAGAAAGAAGTGAGTATGATGATGGAAGCAGGTGCTACTGCTGTTAGTCTTGGACCTCATCGTCTTCGCGTTGAAACTGCCACGATAGCACTTTTGGCAACTTTCATGTTATGGTCTGACTCGCGGCAAACTTTGGTCTGTTGA 858 0.4441 MLQTLGGVSIRFVNRSWLQSMTMRAFCSSSDYGDQSRGGLPRFYSETLPPSKGSVIRMQGDEFWHMTKVLRLSTNDRVQLFNGKGGLVEGCIQNIDRTGLDFVALNDLIIIPAQNTQLHVLAGFGTLKGGRADWLVEKCTELGANSVTPLLTERSPSISENRVDRLERVILAASKQCQRLHEMVLKHPIKIDDLLHLIAQSKLSLVATAKATPVLSALTSLEKETGGLIIIGPEGDFTEKEVSMMMEAGATAVSLGPHRLRVETATIALLATFMLWSDSRQTLVC 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0534 285 Pfam RNA methyltransferase PUA domain 60 103 IPR046887 -
Ssu7g0534 285 Pfam RNA methyltransferase domain 117 273 IPR046886 -
Ssu7g0534 285 Gene3D - 39 282 IPR029026 -
Ssu7g0534 285 TIGRFAM TIGR00046: RNA methyltransferase, RsmE family 55 274 IPR006700 GO:0006364|GO:0008168
Ssu7g0534 285 SUPERFAMILY PUA domain-like 41 102 IPR015947 -
Ssu7g0534 285 SUPERFAMILY alpha/beta knot 116 277 IPR029028 -
Ssu7g0534 285 CDD RsmE-like 118 271 IPR046886 -
Ssu7g0534 285 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 40 281 IPR006700 GO:0006364|GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0534 K09761 - gmx:100777253 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0534 7 9807937 9810548 Ssu7g0534 7 9807937 9810548 ECH