Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0526 ATGACCTTCATAGtggatattttaataatttgtttcattCTCTTGTCCAATGATAGTCTATTTTTCAAGCAAGAAATGGAGTTATCTTTGGTTGGCCTTCAGGATGCTGGGAAAACATCACTTGTAAATGTTATTGCAACTGGTGGATTTAGTGAAGACATGATTCCTACGGTaggatttaatatgaaaaggATAACTAAAGGGAATGTGACAATAAAGTTGTGGGACCTCGGAGGTCAACCAAGGTTTCGCAGTATGTGGGAGAGATACTGCCGTGCTGTTTCAGTTATTGTTTATGTTGTTGATGCAGCTGATTATGACAATTTACCTGTCTCTAGAAGTGAACTTCATGACTTGCTGAGCAAACCTTCTATAAAAGGGATTCCCATACTGATTTTGGGTAATAAGATTGACAAACCTGGGGCATTGTCTGAGCAAGACCTGACAGAGCAGATGGGACTGAAATCCATCAATGATAGAGAAGTTTGTTGCTTCATGATCTCCTGTAAAAACTCCACCAACATTGATACAGTTGTTGATTGGCTTGTAAAACATTCTAAATCGATGAACTGA 573 0.3665 MTFIVDILIICFILLSNDSLFFKQEMELSLVGLQDAGKTSLVNVIATGGFSEDMIPTVGFNMKRITKGNVTIKLWDLGGQPRFRSMWERYCRAVSVIVYVVDAADYDNLPVSRSELHDLLSKPSIKGIPILILGNKIDKPGALSEQDLTEQMGLKSINDREVCCFMISCKNSTNIDTVVDWLVKHSKSMN 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0526 190 SMART arf_sub_2 7 190 - -
Ssu7g0526 190 TIGRFAM small_GTP: small GTP-binding protein domain 24 182 IPR005225 GO:0005525
Ssu7g0526 190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 189 IPR027417 -
Ssu7g0526 190 ProSiteProfiles small GTPase SAR1 family profile. 1 190 - -
Ssu7g0526 190 PRINTS GTP-binding SAR1 protein signature 27 50 IPR006689 GO:0003924|GO:0005525
Ssu7g0526 190 PRINTS GTP-binding SAR1 protein signature 128 149 IPR006689 GO:0003924|GO:0005525
Ssu7g0526 190 PRINTS GTP-binding SAR1 protein signature 83 108 IPR006689 GO:0003924|GO:0005525
Ssu7g0526 190 Pfam ADP-ribosylation factor family 20 184 IPR006689 GO:0003924|GO:0005525
Ssu7g0526 190 SMART ras_sub_4 23 189 - -
Ssu7g0526 190 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8A 18 190 - -
Ssu7g0526 190 SMART sar_sub_1 9 186 IPR006689 GO:0003924|GO:0005525
Ssu7g0526 190 ProSiteProfiles small GTPase Arf family profile. 19 186 - -
Ssu7g0526 190 Gene3D - 7 187 IPR027417 -
Ssu7g0526 190 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 18 190 - -
Ssu7g0526 190 ProSiteProfiles small GTPase Rab1 family profile. 16 190 - -
Ssu7g0526 190 SMART rab_sub_5 26 189 - -
Ssu7g0526 190 CDD Arl10_like 27 185 IPR044154 GO:0003924|GO:0005525|GO:0015031
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0526 Ssu-Chr7 9621802 9623705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0526 30 152 Miscellaneous Gene Families AT5G05670 29.851 1.84e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0526 K07955 - jre:108979721 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0526 7 9621802 9623705 Ssu7g0526 7 9621802 9623705 ECH