Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0524 ATGAAGGTTGCTGCAGAAGGCTGCAACTTATGCTTGGCAGAACCTCAGAGAGCACAGTATGGAGGAGGCATTATAGTAAATCCAGGATTTGATCACAACATAGAGGGTTGGACAGTATTTGGAAAAGGAGCAATCAAGGAACGAATATCGAATGGAGGCAATAGATTCATTGTTGCCCACAACAGAACACAACCATTGGATAGTTTCTCGCAGAAGGTCCAACTTAAGAAAGGAATGCTGTACACCTTTTCTGCATGGTTTCAGCTCAGTGAAGGAAGTGAGACTGTGTcagttatatttaaaacaaaaggaagTGAAATGGTACGAGGAGGCCAAGTGATGGCAAAGCATGGATGCTGGACTCTGCTAAAAGGTGGCATAGTTGCAAACTTTTCAAGTCCTGTTGAGATCCTTTTTGAGAGCAAGAATTCCACTGTGGAAATATGGGCTGACAATGTCTCCTTACAACCATTCACTAAAAAGCAATGGAGATCACTACAAGACGCCAGCATTGAGAGGGTACGTAAGAGGAAAGTGAGATTCCAGATAACTCATGTAAATGAAACAGCTATGAAAGGAGCTACAATCATCGCCACACTAGTAAAGTTGAACTTCCCATTTGGATGTGGAATGAACCATCATATCCTCACAAACAAAGACTACCAGAATTGGTTTGTGTCAAGGTTCAAATTCACAACTTTCACCAATGAGATGAAGTGGTATAGTACAGAGAAAAAGCAAGGCCAGGAAAACTACACTATCTCAGATGCCATGCTGAAATTTACCAAAGAGAATGGCATTTCTGTGAGAGGCCATAACATTTTCTGGGACGATCCAAAATATCAACCTGAATGGGTTAAGACCCTATCACCTGAGGATTTAGCGAGAGCAGCAGCAAAAAGAATGGAATCTGTGGTTTCAAGATACAAAGGAGAACTGATTGCATGGGATGTGATGAATGAGAATCTCCACTTCCACTTTTATGAGGACAAATTCGGTGAAAATGCCTCTGCAGAAGCATACGCAACAGCTTACGAGCTTGATCCAACGCCAAAGATGTTCCTGAATGAGTATAACACCATTGAGTATAGTGGGGATGAGGCTGCCAGCCCAGACAAATATATCAAGAAACTTCAGGAGATTCTGTCATTTCCAAGAGCTACTGGAATGCCAGCAGCAATAGGGTTGCAAGGCCATTTTGCTAGTGGCCAGCCAAATCTTGCTTATATGAGGTCAGGTCTAGATCTTCTTGCTGCAATTGGACGTCCAATATGGCTCACAGAAGTGAGTGTGGATCCACAGCCAAATCAGGCAGAGTACTTGGAAGAGGTACTACGAGAGGGGTACTCTCATCCTGCTGTTGAAGGGATTATAATGTTTTCTGGTCCAGCACAAGCTGGTTTCAACGCCACTACTCTGGCCGATGAGAGTTTCAAAAACACTCCAGCTGGAGACGTTGTGGACAGGTTGATTGACGAGTGGGGAACTGGGCCTCAAATTGCCACAGCAGATGACAGAGGATTTGTAGATCTTTCACTGCACCATGGAGATTATGATGTAACTGTTACACATCCTCTGACCCACTCCTCTATAACAATGAATCTACGTGTAAAGAAAGATTTTTCACCAGAAACCATTCATGTGAAAATGCGTGCGTAA 1659 0.428 MKVAAEGCNLCLAEPQRAQYGGGIIVNPGFDHNIEGWTVFGKGAIKERISNGGNRFIVAHNRTQPLDSFSQKVQLKKGMLYTFSAWFQLSEGSETVSVIFKTKGSEMVRGGQVMAKHGCWTLLKGGIVANFSSPVEILFESKNSTVEIWADNVSLQPFTKKQWRSLQDASIERVRKRKVRFQITHVNETAMKGATIIATLVKLNFPFGCGMNHHILTNKDYQNWFVSRFKFTTFTNEMKWYSTEKKQGQENYTISDAMLKFTKENGISVRGHNIFWDDPKYQPEWVKTLSPEDLARAAAKRMESVVSRYKGELIAWDVMNENLHFHFYEDKFGENASAEAYATAYELDPTPKMFLNEYNTIEYSGDEAASPDKYIKKLQEILSFPRATGMPAAIGLQGHFASGQPNLAYMRSGLDLLAAIGRPIWLTEVSVDPQPNQAEYLEEVLREGYSHPAVEGIIMFSGPAQAGFNATTLADESFKNTPAGDVVDRLIDEWGTGPQIATADDRGFVDLSLHHGDYDVTVTHPLTHSSITMNLRVKKDFSPETIHVKMRA 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0524 552 Gene3D Glycosidases 194 496 - -
Ssu7g0524 552 Gene3D - 13 158 - -
Ssu7g0524 552 Pfam Glycosyl hydrolase family 10 199 438 IPR001000 GO:0004553|GO:0005975
Ssu7g0524 552 Pfam Carbohydrate binding domain 23 125 IPR003305 GO:0016798
Ssu7g0524 552 SMART glyco_10 238 490 IPR001000 GO:0004553|GO:0005975
Ssu7g0524 552 PANTHER GLYCOSYL HYDROLASE 10 549 IPR044846 GO:0004553|GO:0005975
Ssu7g0524 552 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 10 549 - -
Ssu7g0524 552 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 197 490 IPR001000 GO:0004553|GO:0005975
Ssu7g0524 552 SUPERFAMILY Galactose-binding domain-like 21 157 IPR008979 -
Ssu7g0524 552 SUPERFAMILY (Trans)glycosidases 192 497 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0524 Ssu-Chr7 9608458 9612245 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0524 11 540 Glycoside Hydrolase AT4G33840 50.469 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0524 - - gmx:100802367 999.579
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0524 7 9608458 9612245 Ssu7g0524 7 9608458 9612245 ECH