Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0520 atgaaaaataaacttttgtttttatccaCTGTCCTTTCATTTCTGATACTTCCAGCCGCTAGCCAAAAACATGCATGTGACCAAGGCTCTGCCAAGACTAGTAACTTTTCATTCTGCGACACTTCGCTATCTTATGAGGCCAGGGCGAAGGACTTGGTGTCACGCCTAACACTTGAAGAAAAGGCACAGCAATTAGTAGACCCTTCTGCGGGTATTTCCCGGCTTGGTGTGCCTGCTTATGAATGGTGGTCAGAGGCACTTCATGGGGTCTCCAACTTAGGGCCAGGGACACGTTTTGACAAGAGGGTTCCGGGTGCCACTAGCTTCCCAGCAGTGATACTATCAGCTGCAAGCTTTAATGCAAGTTTGTGGCACAAGATGGGGCAGGTTGTGTCAACCGAGGCTAGAGCCATGTACAATGTGGACTTGGCTGGTTTGACATTTTGGAGTCCCAATGTGAATGTGTTCCGTGACCCTAGGTGGGGGCGTGGCCAGGAAACTCCAGGGGAGGACCCCTTGGTGGTGTCTAGATATGCTGTTAAGTATGTTCGTGGCCTGCAAGAAGTGGAGGATGAAGCTGATAGGCTTAAGGTTTCAAGCTGTTGTAAGCATTACACTGCTTATGACCTTGACAACTGGAAAGCCGTTGATCGCTTCCATTTTGATGCAAAGGTGACAAAGCAAGACTTGGAGGACACGTATCAGCCTCCGTTCAAGAGTTGTGTGGAGGAGGGGCATGTTAGTAGTGTTATGTGTTCTTACAATAGGGTGAATGGGATTCCTACATGTGCCGACCCAGACCTTCTCAAAGGGGTAATAAGAGGCCAGTGGAGTCTAGACGGATATATTGTTTCAGATTGTGATTCAGTGGAAGTCTATTACGATGCAATTCATTACACTTCAACTCCTGAAGATGCAGTGGCTCTTGCACTGAAAGCAGGTTTAAACATGAACTGTGGCGATTTTCTGAAAAAATACACTGCAAATGCAGTAAACTTGAAAAAAGTAGATGTAGCTACTGTAGACCAGGCCTTGGTGTACAACTACATAGTCCTAATGAGATTGGGCTTCTTTGATGACCCCAAGTCACTTCCATTTGCAAACCTTGGGCCATCCGATGTATGTACTAAAGACAATCAACAACTGGCTCTAGATGCTGCAAAGCAAGGAATAGTTTTGCTGGAAAACAATGGAGCTCTTCCCTTATCCCAAACTAACATTAAAAAACTGGCTGTGATTGGACCAAATGCCAATGCCACCACAGTTATGATTAGCAACTATGCTGGCATACCTTGCCGCTACACTAGCCCTTTACAAGGACTACAGAAGTACACCTCTTCTGTAAATTATGCACCTGGTTGTAGCAATGTTAAATGTGGTAATCAGAGCCTCATTGCAGCTGCAGTTAAGGCAGCAGCCTCTGCTGATGCAGTGGTGTTGGTTGTGGGATTAGACCAATCTATTGAAGCAGAGGGCCTGGATAGAGAGAACTTGACATTACCTGGATTCAAGAGAAGCTTGTGGAAGATGTGGCTGATGCTACCAAAGGAAAAGTGA 1557 0.4547 MKNKLLFLSTVLSFLILPAASQKHACDQGSAKTSNFSFCDTSLSYEARAKDLVSRLTLEEKAQQLVDPSAGISRLGVPAYEWWSEALHGVSNLGPGTRFDKRVPGATSFPAVILSAASFNASLWHKMGQVVSTEARAMYNVDLAGLTFWSPNVNVFRDPRWGRGQETPGEDPLVVSRYAVKYVRGLQEVEDEADRLKVSSCCKHYTAYDLDNWKAVDRFHFDAKVTKQDLEDTYQPPFKSCVEEGHVSSVMCSYNRVNGIPTCADPDLLKGVIRGQWSLDGYIVSDCDSVEVYYDAIHYTSTPEDAVALALKAGLNMNCGDFLKKYTANAVNLKKVDVATVDQALVYNYIVLMRLGFFDDPKSLPFANLGPSDVCTKDNQQLALDAAKQGIVLLENNGALPLSQTNIKKLAVIGPNANATTVMISNYAGIPCRYTSPLQGLQKYTSSVNYAPGCSNVKCGNQSLIAAAVKAAASADAVVLVVGLDQSIEAEGLDRENLTLPGFKRSLWKMWLMLPKEK 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0520 518 PRINTS Glycosyl hydrolase family 3 signature 109 128 IPR001764 GO:0004553|GO:0005975
Ssu7g0520 518 PRINTS Glycosyl hydrolase family 3 signature 272 290 IPR001764 GO:0004553|GO:0005975
Ssu7g0520 518 PRINTS Glycosyl hydrolase family 3 signature 198 214 IPR001764 GO:0004553|GO:0005975
Ssu7g0520 518 PANTHER SUGAR HYDROLASE-RELATED 6 508 IPR044993 GO:0009044|GO:0045493
Ssu7g0520 518 PANTHER BETA-D-XYLOSIDASE 5-RELATED 6 508 - -
Ssu7g0520 518 Gene3D - 375 512 IPR036881 GO:0004553|GO:0005975
Ssu7g0520 518 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 391 509 IPR036881 GO:0004553|GO:0005975
Ssu7g0520 518 Pfam Glycosyl hydrolase family 3 N terminal domain 102 344 IPR001764 GO:0004553|GO:0005975
Ssu7g0520 518 SUPERFAMILY (Trans)glycosidases 37 390 IPR017853 -
Ssu7g0520 518 Gene3D - 48 365 IPR036962 GO:0004553|GO:0005975
Ssu7g0520 518 Pfam Glycosyl hydrolase family 3 C-terminal domain 391 509 IPR002772 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0520 Ssu-Chr7 9570683 9572738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0520 12 507 Glycoside Hydrolase AT3G19620 75.494 0.0 802
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0520 K15920 - gmx:100817869 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0520 7 9570683 9572738 Ssu7g0520 7 9570683 9572738 ECH