Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0486 ATGCTTTCACTGTCTCGTCGGTTTGTCGTTCCCACCGCCCAAAAGTTCAAACCAATTGTTGCGTTTCTTCACTCTCCTTCCTCGTGTTCCATTGCAGACTCCACCAACCTCGCTACCCTCCTACAAGGCCACCTTCCGCGTTCTTATCTTCTCCAAATTCACACACGCATTTTCCAACTTGGCGCGCACCAAGACAACCTCGTAGCCACGCGCCTTATTGGGCACTACCCATCTCACATCGCTCTACGGGTCTTTCACCATCTCCAAAATCCAAACATCTTCCCTTTCAACGCCATCATCAGAGTCCTCGCCCAAGAGGGTCACTTTTTTCCAGTCGTTTCCGTGTTCAACGATTTGAAACGGCGTCCACTTTCGCCCAACGACTTAACCTTCTCCTTCCTCCTTAAGGCATGCTTTCGGTCCAAAGATGCCCGTTATGTTGAACAGATTCATGCCCACATTCAGAAAATAGGTTTCCTCTCCGATTCTTTTGTTTGTAATGGCTTGGTTTCCGTGTATGGCAAAGGCTTTAACAATTTGGTATCTGCCCGTAAAGTGTTTGATGAAATTCCTGACAAAAGGGTAGTTAGCCATTGGACTAACTTGATCACTGGTTTTGCCCAGTCTGGTCAGAGTGAAGAAGTTTTGCAGCTTTTCCATGTGATGGTTAGGCAGAACTTGCTTCCCCAAAGTGATACTATGGTCAGTGTTTTATCAGCTTGTTCTAGCCTTGAGATGCCAAAAATTGAGAAATGGGTTAACGTTCTTTCAGAATTGATTGGTGATGGCGTGAGTACTAGGGAAACTTGCCATGATTCGGTTAACACAGTACTGGTTTATTTGTTTGGTAAATGGGGGAAGATTGAGAAGAGTAAAGAAGGGTTTGACCGAATTTCTGCAACAGGAAAAAGAAGTGTGGTTCCTTGGAATACTATGATAAGTGTATACGTTCAAAATGGTTGTCCTGTGGAGGGTTTAAGTCTTTTCCGCATGATGATTGAAGAACAAACCACTACACCTAACCATGTTACAATGGTTAGTGTGCTTTCAGCCTGTGCTCAAATTGGTGATTTGAGTTTTGGTAGTTGGGTTCATGAGTACCTAATATCTCTAGGACATAAAGATACCATTGGGGCAAACCAAATTCTCGCCACATCTTTAATTGACATGTATTCTAAATGTGGTGATTTGGATAAGGCAAAGGAAGTTTTTGAGCATACAATCTCCAAAGATGTTGTCTTATTCAATGCAATGATCATGGGTCTTGCAGTATATGGTGAAGGAGAGGATGCATTGAGACTCTTCTACAGAATGCCAGAATTTGGCTTACAACCCAATGCTGGAACATTCCTTGGTGCGTTAAGTGCATGCAGTCACTCTGGGTTGCTGGAAATGGCGcctattatttttgtcaaagcTTGCAAGTTGGGTTATCTGCATTTAGTTGCTGAGAATTAg 1458 0.4294 MLSLSRRFVVPTAQKFKPIVAFLHSPSSCSIADSTNLATLLQGHLPRSYLLQIHTRIFQLGAHQDNLVATRLIGHYPSHIALRVFHHLQNPNIFPFNAIIRVLAQEGHFFPVVSVFNDLKRRPLSPNDLTFSFLLKACFRSKDARYVEQIHAHIQKIGFLSDSFVCNGLVSVYGKGFNNLVSARKVFDEIPDKRVVSHWTNLITGFAQSGQSEEVLQLFHVMVRQNLLPQSDTMVSVLSACSSLEMPKIEKWVNVLSELIGDGVSTRETCHDSVNTVLVYLFGKWGKIEKSKEGFDRISATGKRSVVPWNTMISVYVQNGCPVEGLSLFRMMIEEQTTTPNHVTMVSVLSACAQIGDLSFGSWVHEYLISLGHKDTIGANQILATSLIDMYSKCGDLDKAKEVFEHTISKDVVLFNAMIMGLAVYGEGEDALRLFYRMPEFGLQPNAGTFLGALSACSHSGLLEMAPIIFVKACKLGYLHLVAEN 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0486 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Ssu7g0486 485 PANTHER OS01G0913400 PROTEIN-RELATED 40 471 - -
Ssu7g0486 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Ssu7g0486 485 Gene3D Tetratricopeptide repeat domain 368 468 IPR011990 GO:0005515
Ssu7g0486 485 Gene3D Tetratricopeptide repeat domain 274 367 IPR011990 GO:0005515
Ssu7g0486 485 Gene3D Tetratricopeptide repeat domain 112 273 IPR011990 GO:0005515
Ssu7g0486 485 Pfam PPR repeat 198 226 IPR002885 -
Ssu7g0486 485 Pfam PPR repeat 308 335 IPR002885 -
Ssu7g0486 485 Pfam PPR repeat 385 406 IPR002885 -
Ssu7g0486 485 Pfam PPR repeat family 410 457 IPR002885 -
Ssu7g0486 485 Pfam PPR repeat family 91 139 IPR002885 -
Ssu7g0486 485 TIGRFAM PPR: pentatricopeptide repeat domain 413 447 IPR002885 -
Ssu7g0486 485 TIGRFAM PPR: pentatricopeptide repeat domain 385 412 IPR002885 -
Ssu7g0486 485 TIGRFAM PPR: pentatricopeptide repeat domain 309 335 IPR002885 -
Ssu7g0486 485 TIGRFAM PPR: pentatricopeptide repeat domain 199 229 IPR002885 -
Ssu7g0486 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Ssu7g0486 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 126 IPR002885 -
Ssu7g0486 485 PANTHER - 40 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0486 Ssu-Chr7 9099154 9101144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0486 325 480 Glycoside Hydrolase AT3G49170 30.189 7.48e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0486 - - gmx:100807506 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0486 7 9099154 9101144 Ssu7g0486 7 9099154 9101144 ECH