Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0231 ATGGGAGTTCAACGACATGAAGCGCTTTCTGAAGACATTGAGCCTGCTGAAAATGCTTGTGCTAGTAGTTCTTTGAACCAAGGAGCTCGTTCAAGTGAGTCTGCCAACAGCAATCCAAGTGTAAATACTGAAAATAGTGAAGTTAACGAGCCAGGTGGCATTTCttacaaaaaaagtaatacaCCACATATCTATAGACAAGATGttgtgaaaaataatatcagTGGCATGATTGGGATTGTGACAGAAGTTGCCGGTGATTCGGATTCGGATTCAGATAGCAGCGTCACTGATGATGAGAATGATAGTGAGGATGaggatggtgatggtgatggtgaggAAGGCGATGACAGTAATAATGCTAGCAGAAATTCTGAAAGTAATGGTGCTGCTGGGCATTGTAAAACTGATACTCTTCTGGCTGACCAGCTGCACGTGCTGTGGATGGACGAATCTGAATCCACTCAAAATTTTAGTGATGTCGAAGTTGTTGATCGTGGGTTTTTACATGGGGATTTTGTTGCTGCTGCTTCAGACCCTACTGGGCAAGTGGGTGTAGTGGTTGATGTCAATATATGTGTGGATCTGTTGGCCCAAGATGGATCCATAATAAAAGATGTTTCATCAAAAAGCTTACAGCGTATTAGGGATTTCACCGTTGGTGATTATGTGGTGCTTGGGCCATGGCTAGGCAGAATTGATGATGTTTTGGATAATGTAACTGTCTTATTCGATGATGGTTCAGTTTGTAAAGTCTCAAAAGCAGATCCATTGAATCTTAAACCAATTTCTAAGAATATTCTTGAAGATGGGCATTTTCCTTATTACCCAGGGCAACGGGTAAGGGCTAGCTCctcttcagtcttcaagaattCAAGATGGCTGTCTGGCTTGTGGAAAGCTAATAGGTTAGAGGGTACTGTCACTAAGGTTACAGTTGGATCAGTGTTTGTTTATTGGATAGCATCTGCAGGTTATGGGCCATATTCTTCTACTACCCCAGCTGAGGAGCAGAGtccaaaaaacttaaaattgttgGCTTGTTTTGCTCATGCAAATTGGCAATTGGGTGACTGGTGTCTCTTACCTTCATCAGTACTGTCATCGTCAGTTTCAATGGACAAAGGCTTATCAAAATTGGAACTTAACAATTCTGCTAACAATGAATTAGATTCTAATCAGACAGGAAGTGGATGTGATTCAGAAGAAGCTACAGCTGAGGAAACAAATGGGAATAAGGATCCTATGGACCTTGATCCAGTTGATGCTTTGGAAGGGAATGACggaaatgataaaattaatccTTCACGTGATTCTAGCTCATGTGGTAGTTCTATCTCTGTATCAAAGGAACCTGTCCATGAAGCTTGGCCTCTTCACCGCAAGAAAATTAGGAAAGTTGTCATCAGGAAAGATAAAAGGGCCCGAAAGAAAGAGGAAAGTTTTGAGAAAGCTCTTTTGATTGCCAACACAAGGACAAGAGTTGATGTTGCATGGCAGGATGGAACAATAGAGCGTGAACTAAATTCTACAAGTTTAATTCCTATAGATAATCCTGGTGATCATGAATTCGTTTCAGAACAATATGTGGTAGAGAAGACCtctgatgatggtgatgatatTTCTGAAGCTAGGCGAGTCGGGGTTGTGAGAAGTGTTAATGCCAAGGAGCGGACAGCTTGTGTGAGGTGGTTAAAAAAAGTTGCCAGAGCAGAAGATCCTCGAGAGTTTGACAACGAGGAAGTTGTAAGTGTGTATGAGCTAGAGGGCCATCCAGATTATGATTACTGCTATGGGGATGTGGTTGTTCGCCTGTCACCTGTGTCTGTCTGTTTAGAAACAGCTTCTGTTGGAGAGTCCAGTGAGAAATCAATGCAGAAAAGTGAAGAGAGTGGGGTTAAAAGGGAAGCAAAAACCCAAACTGGTGCTAGTAAAGTAGAAAATGCGTCTGGTGAAACCTGTGTACAATTTTCTGACCTCTCTTGGGTTGGAAATATAACCGGCCTTAAGAATGGTGATATTGAAGTTACTTGGGCTGATGGGATGGTGTCAACGGTTGGACCCCAAGCAATCTATGTGGTTGGTCGAGACGATGATGATGAATCAATTGCTGCTGGGAGTGAAATAAGTGATGCTGCAAGCTGGGAAACTGTTAATGATGATGAAATGGAAGTCCTTGAGGAGTCCAGAGagGATGTTGAGAGGGAAAATTCAAGCAATGTTACTTCTGAGGCAGAAGAAAGTGGAGAGAATGATTTTGGTAGGGCTGCAGCACTTTCTGTTCCCCTAGCAGCATTTCGATTTGTCACTAGACTTGCCAGTGGAATATTCTCAAGGGCCCCAAGGAACTTAGATCCTATTAACTTGCAGTTAAAACTTGAAAGGGAACATCCATCACCAGTAGTTAATGATGAGTCTAGTTCACAGAAACATATTGCCATTGACGGTGATAATTCTGGCAATAAGAATGAAAGATATGAGGAGGTTGTTTCAGAAGCAACTGAAACTCTGGAAGCATGTGAGGCACTCTGTAGCTTGAGAAATGAAGATGCTCCTGCAAGTTCCGATAATGACACTTGCAGTTTGAAACATTTTGACATAACTAAAGATCCATCAGATCACTATTTTATTGGTGCAAATGGACAGGGTAACAATCGGAAATGGTTTAAGAAAGTGCAACAAGATTGGAGCATACTGCAGAATAACCTTCCTGAGGAAATCTATGTACGAGTTTATGAAGATAGAATGGATCTCTTGAGAGCAGTTATTGTAGGGCCATATGGAACCCCTTACCAAGATGGgctctttttctttgattttcaccTTCCGCCAGAATACCCTGATGTTCCACCATCGGCATACTATCATTCTGGGGGCTGGCGGATTAACCCTAATTTGTACGAGGAAGGGAAGGTTTGCCTTAGCCTTCTAAATACATGGACAGGTAGAGGAAATGAAGTATGGGATCCAAAATCTTCTAGCATCCTTCAGGTTCTAGTTTCACTGCAAGGTTTAGTACTCAACTCTAAGCCTTACTTCAATGAAGCTGGGTATGATAAGCAGATTGGAACAGCTGAAGGAGAGAAGAATTCATTGTCATACAATGAGAATACCTTTTTACTTAACTGCAAGACTATGATGTATCTCATGCGGAAACCCCCCAAGGATTTTGAAGTGCTCATCAAAGAACATTTTAGGAGGCGGGGTCATAACATCCTCAAGGCTTGTGATGCACATATGAAAGGTTACTTGATTGGCTCGCTGACTAGAGATGCCTCTGTAAGTGAAAAGAGCAGTCAGAATTCAACCTCTGTGGGTTTCAAGTTGATGTTAGCCAAGATAGTGCCAAAGCTTTTCTTGTCACTAAGTGAGGTTGGAGCTGATTGCGATGAATTTAAGCATCTGAAAGATTTGTAG 3417 0.4027 MGVQRHEALSEDIEPAENACASSSLNQGARSSESANSNPSVNTENSEVNEPGGISYKKSNTPHIYRQDVVKNNISGMIGIVTEVAGDSDSDSDSSVTDDENDSEDEDGDGDGEEGDDSNNASRNSESNGAAGHCKTDTLLADQLHVLWMDESESTQNFSDVEVVDRGFLHGDFVAAASDPTGQVGVVVDVNICVDLLAQDGSIIKDVSSKSLQRIRDFTVGDYVVLGPWLGRIDDVLDNVTVLFDDGSVCKVSKADPLNLKPISKNILEDGHFPYYPGQRVRASSSSVFKNSRWLSGLWKANRLEGTVTKVTVGSVFVYWIASAGYGPYSSTTPAEEQSPKNLKLLACFAHANWQLGDWCLLPSSVLSSSVSMDKGLSKLELNNSANNELDSNQTGSGCDSEEATAEETNGNKDPMDLDPVDALEGNDGNDKINPSRDSSSCGSSISVSKEPVHEAWPLHRKKIRKVVIRKDKRARKKEESFEKALLIANTRTRVDVAWQDGTIERELNSTSLIPIDNPGDHEFVSEQYVVEKTSDDGDDISEARRVGVVRSVNAKERTACVRWLKKVARAEDPREFDNEEVVSVYELEGHPDYDYCYGDVVVRLSPVSVCLETASVGESSEKSMQKSEESGVKREAKTQTGASKVENASGETCVQFSDLSWVGNITGLKNGDIEVTWADGMVSTVGPQAIYVVGRDDDDESIAAGSEISDAASWETVNDDEMEVLEESREDVERENSSNVTSEAEESGENDFGRAAALSVPLAAFRFVTRLASGIFSRAPRNLDPINLQLKLEREHPSPVVNDESSSQKHIAIDGDNSGNKNERYEEVVSEATETLEACEALCSLRNEDAPASSDNDTCSLKHFDITKDPSDHYFIGANGQGNNRKWFKKVQQDWSILQNNLPEEIYVRVYEDRMDLLRAVIVGPYGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQIGTAEGEKNSLSYNENTFLLNCKTMMYLMRKPPKDFEVLIKEHFRRRGHNILKACDAHMKGYLIGSLTRDASVSEKSSQNSTSVGFKLMLAKIVPKLFLSLSEVGADCDEFKHLKDL 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0231 1138 CDD UBCc 890 1040 IPR000608 -
Ssu7g0231 1138 MobiDBLite consensus disorder prediction 726 751 - -
Ssu7g0231 1138 MobiDBLite consensus disorder prediction 799 822 - -
Ssu7g0231 1138 MobiDBLite consensus disorder prediction 619 645 - -
Ssu7g0231 1138 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 887 1047 IPR000608 -
Ssu7g0231 1138 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23-RELATED 58 1136 - -
Ssu7g0231 1138 SMART ubc_7 890 1047 - -
Ssu7g0231 1138 MobiDBLite consensus disorder prediction 406 420 - -
Ssu7g0231 1138 MobiDBLite consensus disorder prediction 386 405 - -
Ssu7g0231 1138 SUPERFAMILY UBC-like 868 1054 IPR016135 -
Ssu7g0231 1138 MobiDBLite consensus disorder prediction 17 61 - -
Ssu7g0231 1138 MobiDBLite consensus disorder prediction 386 454 - -
Ssu7g0231 1138 Coils Coil 823 843 - -
Ssu7g0231 1138 Pfam Ubiquitin-conjugating enzyme 892 1036 IPR000608 -
Ssu7g0231 1138 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 58 1136 - -
Ssu7g0231 1138 MobiDBLite consensus disorder prediction 83 134 - -
Ssu7g0231 1138 MobiDBLite consensus disorder prediction 433 448 - -
Ssu7g0231 1138 MobiDBLite consensus disorder prediction 92 115 - -
Ssu7g0231 1138 MobiDBLite consensus disorder prediction 802 816 - -
Ssu7g0231 1138 MobiDBLite consensus disorder prediction 1 61 - -
Ssu7g0231 1138 Gene3D Ubiquitin Conjugating Enzyme 820 1119 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0231 Ssu-Chr7 3785130 3793979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0231 165 365 Miscellaneous Gene Families AT2G33770 42.079 1.01e-49 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0231 K10581 - gmx:100809513 1979.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0231 7 3785130 3793979 Ssu7g0231 7 3785130 3793979 ECH