Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0215 ATGGACGCAGACATTGATCACTACGCGGTGCTAGGGTTACCATCGGGCGAAGAAGGCGCGAAGCTTACGGAGAAAGAAATCACAAAGGCCTACAGATGGAAGGCTCTGGAGTTGCACCCCGACAAGAGGCCCGACGACCCCAACGCCGCCGCCAACTTCCAGCAGCTCCGCACCTCGTACGACATCCTCAGGGACGACAAGGCCCGCAAGTTGTTCGACGACCTCTTGCGCGTCAAGCGCGAGCGCGAGCTCCGCCAGTCGCAGCGCGACGGAAAGCGCCGCAAGATGGTGTCCGATCTCGAGCGCCGAGAGCGCGACGCCACCGCCCCCGACCCCGCCGCCAAGGAGCGCGAGGAGGAGGCCAGGATCGCGAAACAGCTCAAGGAGGAGATCGCCAGGATTCGCGCTATGCACGGGAAGAAGGCGGAGCCGGAGCCGGCGccgaaggagaaggagaaggagagggccggtggcggtggcggtggtggAGTGGATCAAGAGAAGGTCCTGAAGGTTTCGTGGGAAAAGGTCGGCGAGGATTATTCGGCTGATAAGTTAAGGGAATTGTTTTCCACGTTTGGTGAAGTGGAAGATGTTGTCATCAAGGGGAGTAAGAAGAAGGGTTCTGCACTCGTTGTTATGGCCTCTAAACAAGAAGCTTTTGCAGCGATTGGGAGTGTGATTGGTCATCTTGCTAATCCGTTGCTGGTTTTACCTCTTAAACCGGCCACTGTGGCTGATTCTTCGAGTGTCCCAAGGTCTGTTGAAACTGACAGGATGAGTAATCTGGTCGGGGCTGGGTATCAAGCTTTTGAGGATTCTGTTCTCAAAAAACTGCAAAAGGCTGCGGAAAAGCAAAAGTGA 864 0.5301 MDADIDHYAVLGLPSGEEGAKLTEKEITKAYRWKALELHPDKRPDDPNAAANFQQLRTSYDILRDDKARKLFDDLLRVKRERELRQSQRDGKRRKMVSDLERRERDATAPDPAAKEREEEARIAKQLKEEIARIRAMHGKKAEPEPAPKEKEKERAGGGGGGGVDQEKVLKVSWEKVGEDYSADKLRELFSTFGEVEDVVIKGSKKKGSALVVMASKQEAFAAIGSVIGHLANPLLVLPLKPATVADSSSVPRSVETDRMSNLVGAGYQAFEDSVLKKLQKAAEKQK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0215 287 PRINTS DnaJ domain signature 31 46 IPR001623 -
Ssu7g0215 287 PRINTS DnaJ domain signature 8 26 IPR001623 -
Ssu7g0215 287 PRINTS DnaJ domain signature 48 68 IPR001623 -
Ssu7g0215 287 CDD DnaJ 6 65 IPR001623 -
Ssu7g0215 287 SMART dnaj_3 5 68 IPR001623 -
Ssu7g0215 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 250 IPR000504 GO:0003723
Ssu7g0215 287 PANTHER DNAJ DOMAIN CONTAINING PROTEIN, EXPRESSED 1 287 - -
Ssu7g0215 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 226 IPR000504 GO:0003723
Ssu7g0215 287 PANTHER DNAJ DOMAIN CONTAINING PROTEIN, EXPRESSED 1 287 - -
Ssu7g0215 287 SUPERFAMILY Chaperone J-domain 4 77 IPR036869 -
Ssu7g0215 287 CDD RRM_DNAJC17 168 240 IPR034254 -
Ssu7g0215 287 ProSiteProfiles dnaJ domain profile. 6 76 IPR001623 -
Ssu7g0215 287 Gene3D DnaJ domain 1 102 IPR036869 -
Ssu7g0215 287 MobiDBLite consensus disorder prediction 137 165 - -
Ssu7g0215 287 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Ssu7g0215 287 Gene3D - 162 250 IPR012677 -
Ssu7g0215 287 MobiDBLite consensus disorder prediction 82 121 - -
Ssu7g0215 287 Pfam DnaJ domain 6 73 IPR001623 -
Ssu7g0215 287 MobiDBLite consensus disorder prediction 137 158 - -
Ssu7g0215 287 Coils Coil 117 137 - -
Ssu7g0215 287 SUPERFAMILY RNA-binding domain, RBD 177 225 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0215 4 122 Miscellaneous Gene Families AT1G16680 30.252 2.92e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0215 K09537 - gmx:100792307 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0215 7 3534777 3536701 Ssu7g0215 7 3534777 3536701 ECH