Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0213 ATGGACAGCCAGAAGATGTCACCATCGACAAGCAGCCCAAAGAAAAGCTCAATAACACTTCATGACCTGTTTGTGCAGGAGTGTCCTCACTTCACCATCCCATCTTCTTCTCCCACTTCAGGAAATGAAGAACTTCTCTCCACTATTTCTTATTGCACCTTTGTTTTCACCTTCACTGACCCTTTAGAATCTCCTGCACAAAGAGACTCAAAGAGGCTCCAACTCACAAGGCTCGTCTCTATATTGAAGTCCTCCAAGAAGCCAGTGCATGAAAAAGTTTTGGGGCCTCTAGTGGCCATGATCTCAGCCAACCTCTTCAGGCCACTCCCTTTACCTTCCAACCCTTCTGCCATCTCAGACTTCCAGAAGAAGAAGACCCCATCTCCATATTTTCTCCTCTGTGATCATTCTTTCCTCCGCAACCTCCTAGCACTTCTCCAGTCTGAAGATCCAAGGGAACGTGAGAGTTTGAAAAATGTGTACCACAAGATATATTCCAAGTTCATTTCTGATCGTTCCTTCATGAGGAAATCAATGACCGAGGTGCTCTTGAACTATGTGTTTGAGACAGAGAAGCATCCGGGGATTGCGGACTTGCTTGAGATATGGGGAACCATAATCAATGGCTTTACCGTGCCACTCAAGGAAGAGCACAAGTTGTTCCTCATGAGAGTGCTCATTCCTCTACACAAGACCAAAGGGATGCAAGTGTACCATAGGCAACTAGCTTACTGCGTCTCACAGTTTGTGCAGAAGGAGCCTATGCTTGGAGGAGTTGTTGTTAGAGGGATTTTGAGGTACTGGCCTGTCACTAACTGTCAAAAAGAAATCTTGCTAATTGGGGAGTTGGAAGATCTGGTCGAGAATTTAGACCCTGACCAGTATCGTAAGTTGGCCTTGCCCTTATGTACCCAGATTACAAAATGCATAAACAGTTGGAATTCACAGGTAGCCGAGCGAGCACTCTATGTATGGAACAATGAGCAGTTCGTGAAAATGGTATCAATAGGAACGGTAGAAGTATTTACTGTCGTTGTAGAAGGCATGGAAAAGAACCTGAAGTGGCATTGGAGCACAAGCGTGAGGCAGCTAACAGAAAGTGTGAAGGTGATGCTAGAAGAAATGGATCCAGATCTGTACTCCAAGGTTCTCATGGGCATGGAAGCTAAAGAATCAATGGCACATCAAGAAGAtatcaagagaaaaaagagatggGAAAGAATAGAATTGGAAGCTGCTAAGAATCAGTTTCTCAATCCACAACGTTATATACGTGTCTCCTACTGA 1287 0.4406 MDSQKMSPSTSSPKKSSITLHDLFVQECPHFTIPSSSPTSGNEELLSTISYCTFVFTFTDPLESPAQRDSKRLQLTRLVSILKSSKKPVHEKVLGPLVAMISANLFRPLPLPSNPSAISDFQKKKTPSPYFLLCDHSFLRNLLALLQSEDPRERESLKNVYHKIYSKFISDRSFMRKSMTEVLLNYVFETEKHPGIADLLEIWGTIINGFTVPLKEEHKLFLMRVLIPLHKTKGMQVYHRQLAYCVSQFVQKEPMLGGVVVRGILRYWPVTNCQKEILLIGELEDLVENLDPDQYRKLALPLCTQITKCINSWNSQVAERALYVWNNEQFVKMVSIGTVEVFTVVVEGMEKNLKWHWSTSVRQLTESVKVMLEEMDPDLYSKVLMGMEAKESMAHQEDIKRKKRWERIELEAAKNQFLNPQRYIRVSY 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0213 428 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 123 IPR002554 GO:0000159|GO:0007165|GO:0019888
Ssu7g0213 428 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 134 413 IPR002554 GO:0000159|GO:0007165|GO:0019888
Ssu7g0213 428 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 134 412 IPR002554 GO:0000159|GO:0007165|GO:0019888
Ssu7g0213 428 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 34 118 IPR002554 GO:0000159|GO:0007165|GO:0019888
Ssu7g0213 428 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 123 - -
Ssu7g0213 428 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 134 413 - -
Ssu7g0213 428 Gene3D - 38 410 IPR011989 -
Ssu7g0213 428 SUPERFAMILY ARM repeat 43 405 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0213 Ssu-Chr7 3506839 3508352 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0213 K11584 - gmx:100802007 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0213 7 3506839 3508352 Ssu7g0213 7 3506839 3508352 ECH