Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0207 ATGAACAAGAGGCCAATAACCGCCGTCTACAAGACGCTTCCCGATCTCTGCAATCGAGAACTGGGCCACCTACGCGCCAGAAATTTCGCTCTTCGTCTTGGCGCTTCCGAGGATCTTGTCCTTCGACTTGATGTACTCAGGAAGCTGCAAAAGCACAGAGGCTGTGTCAACACTGTGAGCTTCAATGCAGATGGTGACATTCTGGTGTCGGGTTCTGATGACAGGAGGGTTATTCTCTGGGACTGGGAAACTGGCCGTATTAAACTCTCTTTCCATTCTGGACACGCTAACAATGTTTTCCAGGCCAAGACCATGCCTCACTCCGATGATCGAAGCATTGTCACCTGTGCTGCTGATGGACAGGTGAGACATGCTCAAATTCTTGAAAATGGAGGAGTGGAAACTAAGTTTCTAGCCAAGCATCAAGGAAGGGCTCATAAATTGGCTATTGAGCCTGGCAGCCCTCATATATTTTATACCTGTGGTGAAGATGGATTAGTGCAGCATTTTGATCTGAGAACTGGGGCTGCAATAGAACTTTTTACATGCCAGCCAATCAAGGATAGATGGAATAACATGCCTGTCATCCATCTTAATGCAATTGCAATTGATCCAAGGAACCCAAATCTCTTTGCGGTTGCTGGGTCCGATGAGTATGCTCGACTTTACGATATTCGCAAGTATAAATGGGATGGATCAACTGATTTTGGTCAACCGACTGACTTCTTTTGCCCTCCACTTTTGATTGGCGACGAGCGAGTTGGAATAACAGGCTTGGCCTTTTCTGAACAAAGAGAGCTGCTTGTGTCATACAATGATGagtttatttacctttttaccCAAGATATGGGTTTGGGACCAAACCCTGATCCTGGCTCCCCTAAATCTATGAACAGTGATGCAAGTGAAATTGGATTTAATCATGGATCTGTGCCATCTTCATCCAACATGGATGCTGATGAGCAAATCACCCCGCAAGTTTTTAAGGGACACAGGAACTGTGAGACAGTGAAGGGTGTTAACTTTTTTGGACCTAAATGTGAGTATGTGGTGAGTGGGTCAGACTGTGGTCGGATTTTCATATGGAAAAAGAAAGGTGGTCAGCTTATTCGTGTCATGGAAGCAGATAAGCATGTTGTGAACTGCATTGAGTCTCATCCTCATACAATGGTTCTTGCAAGCAGTGGTATTGAGCATGACATCAAGATATGGACTCCAAAGGCCCTTGAGAAAGCTACTTTGCCCAAAAATATTGAGCAGAAACCGAAGGCTAGGGGCTGGATGTACCGGATGGCTTCTCATGAAGACCTGATGTTGCGACTGTTTTCACTTCCAAGACAAAGTGTTAGGACAGGAAGCAATGGAGAAAACTCAGCTACAGATCGAGACCTTCTACAGTTGATATTGACATTCAATGCTAATAGTGACAGTTCAaacgatgatgatgatgggGATACAGCCAGCCTAGACGACTTGTTCAGTTAG 1485 0.4424 MNKRPITAVYKTLPDLCNRELGHLRARNFALRLGASEDLVLRLDVLRKLQKHRGCVNTVSFNADGDILVSGSDDRRVILWDWETGRIKLSFHSGHANNVFQAKTMPHSDDRSIVTCAADGQVRHAQILENGGVETKFLAKHQGRAHKLAIEPGSPHIFYTCGEDGLVQHFDLRTGAAIELFTCQPIKDRWNNMPVIHLNAIAIDPRNPNLFAVAGSDEYARLYDIRKYKWDGSTDFGQPTDFFCPPLLIGDERVGITGLAFSEQRELLVSYNDEFIYLFTQDMGLGPNPDPGSPKSMNSDASEIGFNHGSVPSSSNMDADEQITPQVFKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGQLIRVMEADKHVVNCIESHPHTMVLASSGIEHDIKIWTPKALEKATLPKNIEQKPKARGWMYRMASHEDLMLRLFSLPRQSVRTGSNGENSATDRDLLQLILTFNANSDSSNDDDDGDTASLDDLFS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0207 494 SMART WD40_4 191 224 IPR001680 GO:0005515
Ssu7g0207 494 SMART WD40_4 131 171 IPR001680 GO:0005515
Ssu7g0207 494 SMART WD40_4 321 363 IPR001680 GO:0005515
Ssu7g0207 494 SMART WD40_4 84 126 IPR001680 GO:0005515
Ssu7g0207 494 SMART WD40_4 366 405 IPR001680 GO:0005515
Ssu7g0207 494 SMART WD40_4 42 81 IPR001680 GO:0005515
Ssu7g0207 494 SMART WD40_4 241 280 IPR001680 GO:0005515
Ssu7g0207 494 Gene3D - 37 407 IPR015943 GO:0005515
Ssu7g0207 494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 49 86 - -
Ssu7g0207 494 Pfam WD domain, G-beta repeat 46 81 IPR001680 GO:0005515
Ssu7g0207 494 Pfam WD domain, G-beta repeat 326 363 IPR001680 GO:0005515
Ssu7g0207 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 49 90 IPR001680 GO:0005515
Ssu7g0207 494 PANTHER WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN-CONTAINING PROTEIN-RELATED 8 480 - -
Ssu7g0207 494 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 8 480 IPR045151 -
Ssu7g0207 494 SUPERFAMILY WD40 repeat-like 41 404 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0207 Ssu-Chr7 3447173 3454336 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0207 K11804 - gmx:100791300 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0207 7 3447173 3454336 Ssu7g0207 7 3447173 3454336 ECH