Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3695 ATGATACTCTGCTACAGGCGATTGTTACACAATTCAACTCATGCTCTTTCTACCCAATTAGCTTTGTCAGAGCAGTTGCTACATCACTACAACTCATCTCACCACCACCTACAATTTCCACCTTTGAATTTGGAATATCATCGATACAAAGATTCATCTAGCGTGGAAGATGCCCATCAACTTCATCTGCAGATCCACAAAACTGGACTTTCCAATGATGTTTTCTGGTGTAATACTCTTATCAACATATATGTCAGACTTGGCAATTTGGTCTCCGCACAGAAGCTGTTTGACGAAATGCCACAAAAGAACCTCGTTTCTTGGTCTTGCTTGATTTCTGGGTATGCACAAAATGGCATGCCTGATGAGGCTTGTATTTTATTCAAAGGGGCCATTTCAGCTGGCCTTTTCCCAAACCATTATGCTATTGGTAGTGCTCTTCGAGCATGCCAAGAGCTCGGTCCAACTAAGCTTAAACTCGGGATGGAGATTCATGGCTTAATTTCAAAATCTCCATGTGCTTCGGACATGGTGTTGTCTAATGTGCTCATGTCCATGTATTCACATTGCTCGGCTTCCATTGATGATGCTCGTCATGtttttgatgaaataaaaattaaaacttctgCATCCTGGAATTCTATCATTTCGGTCTATTGTCGTAGGGGAGATGCAATTTCTGCTTTTAAGCTATTTTCTAGCATGCAAAGGGAAGCTACAGAACTTACCTGCTGGCCTAATGAATATACCTTCTGTAGCTTAGTAACTGTTGCATGCTCTCTGGTTGACTGTGGACTGACTTTGCTTGAGCAGATGCTGGCCAGGATTGAGAAATCTAGCTTGGTACAAGATTTGTATGTTGGTAGTGCATTGGTCAGCGGGTTTGCAAGGTATGGTTTAATAGATTCtgctaaaatgatttttgagcAGATGGGTGATCGTAATGCAGTAACTATGAATGGGTTAATGGTTGGATTGGCAAGGCAGCACCAGGGTGAAGAAGCAGCTAAGATATTCaaggaaatgaaatatttaGTTGAAATAAATGCAGTATCTTATGCGGTTCTTTTAAGTGCTTTTActgaattttcaaatttaaaggaagggaagagaaagGGTCAAGAGTCAGTTATCCAAACTATAAAAGAGATTGGATACACGCAGTTGCAGTACTGCATTGCGGAGCGCAattggaaagaaaagaagaatagaTGGGACATTGTTGCCGCGTTCCCCCCACTATcctctttataa 1254 0.3812 MILCYRRLLHNSTHALSTQLALSEQLLHHYNSSHHHLQFPPLNLEYHRYKDSSSVEDAHQLHLQIHKTGLSNDVFWCNTLINIYVRLGNLVSAQKLFDEMPQKNLVSWSCLISGYAQNGMPDEACILFKGAISAGLFPNHYAIGSALRACQELGPTKLKLGMEIHGLISKSPCASDMVLSNVLMSMYSHCSASIDDARHVFDEIKIKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELTCWPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSLVQDLYVGSALVSGFARYGLIDSAKMIFEQMGDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKYLVEINAVSYAVLLSAFTEFSNLKEGKRKGQESVIQTIKEIGYTQLQYCIAERNWKEKKNRWDIVAAFPPLSSL 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3695 417 PANTHER - 157 370 - -
Ssu6g3695 417 PANTHER - 47 273 - -
Ssu6g3695 417 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Ssu6g3695 417 Pfam PPR repeat 106 134 IPR002885 -
Ssu6g3695 417 Pfam PPR repeat 317 343 IPR002885 -
Ssu6g3695 417 Pfam PPR repeat 77 104 IPR002885 -
Ssu6g3695 417 Pfam PPR repeat 289 314 IPR002885 -
Ssu6g3695 417 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 73 103 IPR002885 -
Ssu6g3695 417 Pfam PPR repeat family 208 259 IPR002885 -
Ssu6g3695 417 Gene3D Tetratricopeptide repeat domain 262 388 IPR011990 GO:0005515
Ssu6g3695 417 Gene3D Tetratricopeptide repeat domain 158 261 IPR011990 GO:0005515
Ssu6g3695 417 Gene3D Tetratricopeptide repeat domain 11 157 IPR011990 GO:0005515
Ssu6g3695 417 TIGRFAM PPR: pentatricopeptide repeat domain 211 238 IPR002885 -
Ssu6g3695 417 TIGRFAM PPR: pentatricopeptide repeat domain 77 105 IPR002885 -
Ssu6g3695 417 TIGRFAM PPR: pentatricopeptide repeat domain 106 139 IPR002885 -
Ssu6g3695 417 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 104 138 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3695 Ssu-Chr6 81036153 81039644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3695 58 405 Glycoside Hydrolase AT3G49170 24.928 2.53e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3695 - - gmx:100800858 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3695 6 81036153 81039644 Ssu6g3695 6 81036153 81039644 ECH