Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3692 ATGAAGcacctcctcttcctcttcttcctcgtAGCACTTGTCTCCTCCACGGCCACGAACGCCCACAACATCACGCGCATCCTGGCCAAACACCCCGAGTTCTCCACCTTCAACCACTACCTGACGGTGACCCACCTCGCCGGCGAGATCAACCGCCGCCAGACCATCACGGTCCTCGCCATCGACAATGCGGCCATGTCGTCCCTTCTCGACAGGCACCTCTCCCTCCCCACCCTCAAGAACGTCCTCTCCCTCCACGTCCTCGTCGACTACTTCGGCGCCAAGAAGCTCCACCAGATCAACAACAGCACCACCCTCGTCTCCTCCATGTTCCAGGCCACCGGCGCCGCCGCGGGCACCGCCGGCTACGTCAACATCACCAACCTCAAGGGCGGCAAGGTCGGCTTCGCCGCCGAGGACAACGACGGCACGCTCAACTCCTTCTACGTCAAATCCGTCCAGGAAATCCCCTACTACATCTCCGTCCTCCAAATCAGCCACGCCATCAGCTCCGCCGACGCCGAGGCCCCCACCGCCGCGCCCAGCGCCGTCGACCTCATCGGAATCATGTCCAAGCAAGGCTGCAAGGCCTTCGCCGACCTCCTGCGCGTCTCCAAGGCGCTTCCCACCTTCAAGGAAAACATTGACGGCGGCTTAACGGTTTTCTGCCCCTCCGACGGCGCCGTCAACGGTTTCGCGCCCAAGTACAAGAACCTCACGGACCCCCAGAAGGTCTCCCTCCTGTTGTACCACGGCGTTCCCGTTTACCAGTCCTTGCAGATGCTCAAATCCAGCAACGGCGTCGTCAACACTCTCGCCACCGAGGGAGCCAACAAGTACGACTTCACCGTTCAGAATGACGGCGAGGACGTGAGTCTCGAGACCAAGGTGAACACCGCAAGCGTAGTGGGGACTCTCATAGACCAGGACCCCTTCGTCGCTTATAAGATTAACAAGGTCTTGATGCCGCGCGAGTTGTTTAAGGACAGCGCTGAAGCGCCTGCGGACTCGCCTAAGCCTGCCAAGAAGAAGGGTAAGAAGCCGGCTGCGGCGGATGCGCCGGCGGATGGACCCGCGGCCGAATCGGATAATCAGAAGGCTGCGGATGAAGACACCAATGGGGTAAGTCGATTACACGACGGCGTAAGATTCGTCACGGTGTTGCTCAGTTTGATTATGGGGTTTTTGGTTCTATGA 1197 0.5873 MKHLLFLFFLVALVSSTATNAHNITRILAKHPEFSTFNHYLTVTHLAGEINRRQTITVLAIDNAAMSSLLDRHLSLPTLKNVLSLHVLVDYFGAKKLHQINNSTTLVSSMFQATGAAAGTAGYVNITNLKGGKVGFAAEDNDGTLNSFYVKSVQEIPYYISVLQISHAISSADAEAPTAAPSAVDLIGIMSKQGCKAFADLLRVSKALPTFKENIDGGLTVFCPSDGAVNGFAPKYKNLTDPQKVSLLLYHGVPVYQSLQMLKSSNGVVNTLATEGANKYDFTVQNDGEDVSLETKVNTASVVGTLIDQDPFVAYKINKVLMPRELFKDSAEAPADSPKPAKKKGKKPAAADAPADGPAAESDNQKAADEDTNGVSRLHDGVRFVTVLLSLIMGFLVL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3692 398 MobiDBLite consensus disorder prediction 330 350 - -
Ssu6g3692 398 Pfam Fasciclin domain 195 323 IPR000782 -
Ssu6g3692 398 Pfam Fasciclin domain 32 112 IPR000782 -
Ssu6g3692 398 ProSiteProfiles FAS1/BIgH3 domain profile. 21 169 IPR000782 -
Ssu6g3692 398 Gene3D FAS1 domain 188 323 IPR036378 -
Ssu6g3692 398 Gene3D FAS1 domain 20 163 IPR036378 -
Ssu6g3692 398 SMART fasc_3 220 324 IPR000782 -
Ssu6g3692 398 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 4 396 IPR033254 -
Ssu6g3692 398 SUPERFAMILY FAS1 domain 180 324 IPR036378 -
Ssu6g3692 398 ProSiteProfiles FAS1/BIgH3 domain profile. 182 321 IPR000782 -
Ssu6g3692 398 SUPERFAMILY FAS1 domain 27 148 IPR036378 -
Ssu6g3692 398 MobiDBLite consensus disorder prediction 330 373 - -
Ssu6g3692 398 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 2 4 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3692 Ssu-Chr6 81008912 81010108 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3692 - - gmx:100805178 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3692 6 81008912 81010108 Ssu6g3692 6 81008912 81010108 ECH