Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3578 ATGGCTCGTGAGAAGAGACCCCAATATCACCACAACTACAAAGCCGGAGCTATAAATTCATTGCTAAGAGTGTCTTCAATGATTAGCAATGCAGAAATCATTCTAATTCTAGATTGTGACATGCACTCAAACCATTCACAATCAGTGAGAGATGCTATTTGTTTCTTCATGGATGAAGAGAAAGGCCCAGAAATTGCTTTTGTACAGTTtccacaaaattttgagaatattAGCAAGAATGATTTGTATGGGAATGCTCTATCAGTACTTATGGAGGTGGAGCTTCATGGTGCAGATGGCTATGGTGGCCCTTTGTTTATTGGAACTTGTTGCTTTCATAGAAGAGATGCTCTATGTGGGAAGAAGTTTTGTGGTCAATACAAAAATGATTGGAATGATGAGAATGAGCTAATTAAGGCAAACTTGCAAGAACTAGAAGAAGAATCAAAGGCTCTAGCAAGTTGCGCCTATGAGGAAAACACTCTATGGGGAAAAGAAaTTGGTGCAATATACAAGTGTCTAGTGGAGGATGTGATAACAGGGTTATGGATACAGTTGCAAGGATGGAAATCTATATACTACAACCCACCAAGGAAGGCTTTTTTTGGTATTGCTCCAACTACCTTACTTCACACATTAGTTCAACAAAGGAGGTGGGGTGAAGGCGAGTTGCAAATTTCGCTTTCTAAGTATAGTCCTGTGTGGTATGGTCTTGGAAAGATCAATTTAGGCCTTCTAATGGGATACTGCCACTATAACTATTGGGTAACCACTTGTTTGCCAATATTATATTACTCCATCATCCCTTCACTTTATCTCCTTAAAGGCATTCCCTTGTTTCCAAAGATGGCTAGCCCATGGTTCATACCTTTCACATACGTAATACTTGGAGAAAGTACTTCTAGTTTGATTGAAGGTTTGATTTTTGGAGGCACAATTCAGGGTTGGTGGAACGGCCTAAGGATGTGGCTGTACGTGGGAACAAGTTCTTACCTTTTTGCTTTCATAGACATTGTGTTGAAATtctttgaattttcaaattcatccTTTACCATCACCCCTAAGATCATAGAAGATGACGTTTCCCAACGTTACAAGAAAGAGATCATGGAATTTGGAACTTCTTCTCCATTTTTCACCGTACTAGTAACTCTTGCATTActcaatttgttttgtttacttgTCACTTTAAAGGAATTAGTCCTTAGTGAAGGTGCTCTAGTGGGTGAGAAAATGCTATTGCAAGTTTTACTGTGtgggtttttggttttcatcaaTTTTCCGATATATCAAGGCCTTTTCTTAAGAAGAGACAAGGGTAGATTGCCAAGCTCTCATACTATTAAATCTACTGCATTGGCTTTAAGTGCATGTATCatcttcaaaatattgaaaCTAGATTGA 1404 0.364 MAREKRPQYHHNYKAGAINSLLRVSSMISNAEIILILDCDMHSNHSQSVRDAICFFMDEEKGPEIAFVQFPQNFENISKNDLYGNALSVLMEVELHGADGYGGPLFIGTCCFHRRDALCGKKFCGQYKNDWNDENELIKANLQELEEESKALASCAYEENTLWGKEIGAIYKCLVEDVITGLWIQLQGWKSIYYNPPRKAFFGIAPTTLLHTLVQQRRWGEGELQISLSKYSPVWYGLGKINLGLLMGYCHYNYWVTTCLPILYYSIIPSLYLLKGIPLFPKMASPWFIPFTYVILGESTSSLIEGLIFGGTIQGWWNGLRMWLYVGTSSYLFAFIDIVLKFFEFSNSSFTITPKIIEDDVSQRYKKEIMEFGTSSPFFTVLVTLALLNLFCLLVTLKELVLSEGALVGEKMLLQVLLCGFLVFINFPIYQGLFLRRDKGRLPSSHTIKSTALALSACIIFKILKLD 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3578 467 Pfam Cellulose synthase 145 460 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu6g3578 467 Pfam Cellulose synthase 2 122 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu6g3578 467 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 462 - -
Ssu6g3578 467 Coils Coil 128 155 - -
Ssu6g3578 467 SUPERFAMILY Nucleotide-diphospho-sugar transferases 12 277 IPR029044 -
Ssu6g3578 467 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 131 IPR029044 -
Ssu6g3578 467 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN 1 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3578 Ssu-Chr6 79408197 79411457 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3578 1 464 Glycosyltransferase AT1G55850 56.034 1.93e-178 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3578 - - gmx:112999362 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3578 6 79408197 79411457 Ssu6g3578 6 79408197 79411457 ECH