Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu6g3575 | ATGGCGCAGGTGCTGTCTCTGGGTTTACATTTCCCCGCAGAACCCCTCAACACTgcactttcttcttcttcttcttcttctccttcctcCAAGCCATTGAGGCTTCCCCATAGAACCCGCAGCACCCACATATCCATTCCCACCACTGCCAAAGGCGGTGGCAATCGTTTGCTCAAAACCCAGAAGGTGAATTTAGAGGTTTCTCCTCATAGAGCTGTGTCAGCGGTGAGATTGATGCGGATTGAGCTTGGTGGCGCTTTTGCTGACCTTCTCAACGAGAAAGGGAAAGGTTCTGGTGAAAACGAGATGGGATATGTTCAAAGAACGCTTGGCTTTCGCACTCGGGAATTGAACCATCATGATCTTAGATTGGTCACAGACATTGTTGGGGGCACGATTCGCTGGAGAAGATATCTTGATCATCTTATTAGTTCACTATgtcatgataaaaatatatctagCATGGAACCTCTTCTCTTACAGATTCTACGAATTGGCTTCTATGAGATTGTCAAATTAGATATGGCACCTTATGCGGTTGTAGATGAGAATGTGAAGCTTGCTAAAGTTGCTCTTAGACCTGGGGCTGGCAACATGGTCAATGGAATCCTCCAAAAGCTAGTTGTGCTTAAGGAGAATGAAGCTCTTCCTTTGCCCAAAGTGGAGGGTGATGATCGTGCTCAAGCACGTGCTTTGGCAACTCTGTACTCACATCCAGTTTGGATGGTAAGGAGATGGACAAAGTATCTTGGCCAGGAAGAAGCCATTAAATTGATGATATGGAACAACAGTGAACCCAGTTTCAGCTTAAGAGCAAACCGTGCAAGAGGTTTTTCAAGAGATGACCTTGTGACACAGCTTAATGCATTGAAGGTCCCACACAAGCTTTCTTTGCATTTGGATGAATTTGTTCGCATCAAAACTGGGTTGCAGATTGTCATTCAAGCTGGTCTACTCAAAAAGGGTTTATGTTCAGTTCAGGATGAGAGTGCAGGTCTGGTAGTTTCTGTTGTGGATCCTCAACCTGGTGAAACTATCATTGATTGTTGTGCTGCTCCTGGTGGAAAGACCCTCTACATGGCCTCTCATTTAAGTGGCCAAGGTATTAATTTGTCTaagagaatttattaa | 1131 | 0.4262 | MAQVLSLGLHFPAEPLNTALSSSSSSSPSSKPLRLPHRTRSTHISIPTTAKGGGNRLLKTQKVNLEVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNHHDLRLVTDIVGGTIRWRRYLDHLISSLCHDKNISSMEPLLLQILRIGFYEIVKLDMAPYAVVDENVKLAKVALRPGAGNMVNGILQKLVVLKENEALPLPKVEGDDRAQARALATLYSHPVWMVRRWTKYLGQEEAIKLMIWNNSEPSFSLRANRARGFSRDDLVTQLNALKVPHKLSLHLDEFVRIKTGLQIVIQAGLLKKGLCSVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLYMASHLSGQGINLSKRIY | 376 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu6g3575 | 376 | MobiDBLite | consensus disorder prediction | 18 | 49 | - | - | |
| Ssu6g3575 | 376 | PANTHER | NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN | 38 | 369 | - | - | |
| Ssu6g3575 | 376 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 230 | 367 | IPR029063 | - | |
| Ssu6g3575 | 376 | ProSiteProfiles | SAM-dependent MTase RsmB/NOP-type domain profile. | 258 | 376 | IPR001678 | GO:0008168 | |
| Ssu6g3575 | 376 | Gene3D | - | 85 | 229 | IPR035926 | - | |
| Ssu6g3575 | 376 | Pfam | NusB family | 102 | 208 | IPR006027 | GO:0003723|GO:0006355 | |
| Ssu6g3575 | 376 | SUPERFAMILY | NusB-like | 107 | 242 | IPR035926 | - | |
| Ssu6g3575 | 376 | Gene3D | Sun protein; domain 3 | 230 | 329 | - | - | |
| Ssu6g3575 | 376 | PANTHER | NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING | 38 | 369 | IPR023267 | GO:0001510 | |
| Ssu6g3575 | 376 | MobiDBLite | consensus disorder prediction | 18 | 53 | - | - | |
| Ssu6g3575 | 376 | Gene3D | Vaccinia Virus protein VP39 | 330 | 372 | IPR029063 | - | |
| Ssu6g3575 | 376 | PRINTS | Viridiplantae FMU-related RCMT signature | 215 | 228 | IPR023268 | - | |
| Ssu6g3575 | 376 | PRINTS | Viridiplantae FMU-related RCMT signature | 76 | 99 | IPR023268 | - | |
| Ssu6g3575 | 376 | PRINTS | Viridiplantae FMU-related RCMT signature | 100 | 116 | IPR023268 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu6g3575 | K03500 | - | gmx:100779327 | 669.463 |
Event-related genes