Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3566 ATGGCGCCTGTGGCGGCGAGAAGCACAGGCGCCGTTGGTGTTGGAGCTGCCATCTTCGTCTCGCTCGCGCTCACCTATTTCATCTGCCACCGCCGCTccaagaagaagaacaaatcAAGGAAGGGACTCGTCGACGCCATCGGCAACACCCCTCTGATTCGGATCAACAGCCTCTCCGACGCCACTGGTTGCCAAATTCTCGGCAAGTGCGAGTTCTTGAACCCCGGAGGCAGCGTCAAAGATCGTGTTGCAGTTAAAATCATTGAAGAGGCTCTGGAATCTGGCCAGCTACGTCCAGGTGGAATCGTTACGGAAGGGAGTGCTGGAAGCACTGCCATTAGCATTGCCACTGTTGCCCCTGCCTATGGATGCAAAGCCCACGTGGTTATACCAGATGATGCTGCCATTGAGAAGTCTCAAATACTTGAAGCCCTTGGGGCAACTGTTGAAAGAGTGCGGCCGGTGTCCATTACTCACAAAGACCATTTTGTCAATATTGCAAGAAGACGGGCGTCTGAAGCAAATGATTTTGCATTGAAGCATAGAAATTCACAATTGAATGGCAAGGAGGACACTGAAAGAATAAATGGTTATGAATCTGATGGATACAATCACAGCTCTGTGTTTCCTAATGATTGTCAAGGTGGGTTTTTCGCTGATCAGTTTGAGAACCTAGCGAACTTCAGGGCTCATTATGAGGGTACAGGACCTGAGATTTGGGAACAGACCAATGGAAAGTTAGATGCATTTGTTGCAGCAGCAGGCACTGGTGGTACTGTGGCTGGTGTTTCTAGGTTTCTTCAGGaaaagaatccaaacatcaagTGCTTCCTCGTAGATCCTCCTGGCTCTGGTTTGTTTAATAAGGTAACTAGGGGGGTGATGTACACCAAAGAGGAGGCAGAAGGACGAAGACTTAAGAATCCATTTGACACTATAACAGAAGGAATTGGAATTAACAGGATGACAAGGAATTTTGCGATGGCAAAACTTGATGGGGCCTTTCGAGGCACTGATAGGGAGGCTGTTGAAATGGCTAGGTTTCTTTTGAAGAACGATGGGCTCTTCCTTGGGAGTTCTTCTGCAATGAACTGTGTTGGAGCAGTTAGAGTAGCACAGGCAATTGGCCCTGGTCACACTATTGTAACCATTCTCTGCGACAGTGGAATGAGACATTTGAGTAAGTTCTATGACGCCGAATACTTGTCTCAGCTTGGTTTGACACCGAAAGCAACTGGATTGGAGTTCTTAGGTATCGAATGA 1263 0.4679 MAPVAARSTGAVGVGAAIFVSLALTYFICHRRSKKKNKSRKGLVDAIGNTPLIRINSLSDATGCQILGKCEFLNPGGSVKDRVAVKIIEEALESGQLRPGGIVTEGSAGSTAISIATVAPAYGCKAHVVIPDDAAIEKSQILEALGATVERVRPVSITHKDHFVNIARRRASEANDFALKHRNSQLNGKEDTERINGYESDGYNHSSVFPNDCQGGFFADQFENLANFRAHYEGTGPEIWEQTNGKLDAFVAAAGTGGTVAGVSRFLQEKNPNIKCFLVDPPGSGLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRMTRNFAMAKLDGAFRGTDREAVEMARFLLKNDGLFLGSSSAMNCVGAVRVAQAIGPGHTIVTILCDSGMRHLSKFYDAEYLSQLGLTPKATGLEFLGIE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3566 420 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 69 87 IPR001216 GO:0006535
Ssu6g3566 420 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 26 401 IPR036052 -
Ssu6g3566 420 Gene3D - 77 177 IPR036052 -
Ssu6g3566 420 Gene3D - 213 228 IPR036052 -
Ssu6g3566 420 Pfam Pyridoxal-phosphate dependent enzyme 45 387 IPR001926 -
Ssu6g3566 420 PANTHER CYSTATHIONINE BETA-SYNTHASE 31 418 - -
Ssu6g3566 420 Gene3D - 47 76 IPR036052 -
Ssu6g3566 420 Gene3D - 229 393 IPR036052 -
Ssu6g3566 420 PANTHER CYSTEINE SYNTHASE-RELATED 31 418 - -
Ssu6g3566 420 CDD CBS_like 48 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3566 Ssu-Chr6 79289099 79291125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3566 47 394 Miscellaneous Gene Families AT3G04940 29.429 8.68e-35 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3566 K01738 - gmx:100799081 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3566 6 79289099 79291125 Ssu6g3566 6 79289099 79291125 ECH