Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3563 ATGGAGGGAAAGAGGATGAGGTTCCAATCGGAGCCACAACCACAGAGCGTGATTCTACTCACAAAAATCAAAGAATTCACTCGAGCTTTGCTTGCAGACCTCACCAATGGACGTTCACCGCTCATTCTCATTGATCGCTTCAGAAGCTACTGCACCCGTCCCAACTCCAACTGCTTTTGTGCCTCTGATTTGCCGTGCGGAAAGGAAGTTCTCACACTCCGCAGGAAATCCCACGCGCACAGACTAGCTGTCATGTTAAGAGTGCTGCTGATTGTTCAGAAACTTCTGCAAGAAAACAAGCATAGTTCCAAGAGAGACATTTATTACACGCATCCGTCTATATTTTTGGATCAGTCAATGGTGGACCAAgcaattaatgatatatgtattcTTATGCAGTGCAGTCGCCATAACCTTAACGTTTCTGCAGGGAACGGGTTAATTATGGGCTGGATAAGATTCTCTGAAGGAGAAAGGATATTTGACTGCATCAGTTATCCCAACACTGCCCACCCTGTTCCTGTTCATGTTGAAGAAGTTCAAGATATCATTAGTGTTGCTCATTACATATTAGTTGTCGAGAAAGAATCAGTTTTCCAAAGACTAGCAAACGACCAATTCTGCAATGCAAATCACTGTATCGTCATCACCGGAAGAGGCTACCCAGATATTCCTACAAGAagGTTTTTGCGGCTTCTGGTTGAGAATTTGCGCCTGCCTGCTTATTGCTTGGTAGATTGTGATCCCTATGGCTTTGACATCTTAACCACTTACAGATTTGGTTCAATGCAAATGGCTTATGACACGAAACATCTTCGTGTCCCAGAGATACAATGGCTTGGAGCTATTCCTTCAGATTCTGAGAGATATTTTGTTCCAAAGCAGTGTCTCCTTCCTTTGACTGCTGAAGacaAGAGAAAAGTTGAAGCCATGTTGCCTAGATGCTACCTTCAAAGGGAGGTCCCAGAATGGAGGTTGGAGCTAAATCTGATACTGCAGAAAGGAGTAAAGTTTGAGATTGAAGCCTTATCTGTGCACGCGCTTTCATTTTTGTCAGAGTCTTATATACCATCTAAAATTGAAGCTAAATTGAAAATCTAG 1101 0.4233 MEGKRMRFQSEPQPQSVILLTKIKEFTRALLADLTNGRSPLILIDRFRSYCTRPNSNCFCASDLPCGKEVLTLRRKSHAHRLAVMLRVLLIVQKLLQENKHSSKRDIYYTHPSIFLDQSMVDQAINDICILMQCSRHNLNVSAGNGLIMGWIRFSEGERIFDCISYPNTAHPVPVHVEEVQDIISVAHYILVVEKESVFQRLANDQFCNANHCIVITGRGYPDIPTRRFLRLLVENLRLPAYCLVDCDPYGFDILTTYRFGSMQMAYDTKHLRVPEIQWLGAIPSDSERYFVPKQCLLPLTAEDKRKVEAMLPRCYLQREVPEWRLELNLILQKGVKFEIEALSVHALSFLSESYIPSKIEAKLKI 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3563 366 CDD TOPRIM_TopoIIB_SPO 188 350 IPR034136 -
Ssu6g3563 366 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11-1 14 362 - -
Ssu6g3563 366 Gene3D - 145 364 - -
Ssu6g3563 366 PRINTS DNA topoisomerase VI subunit A family signature 246 262 IPR002815 GO:0003677|GO:0003918|GO:0005694
Ssu6g3563 366 PRINTS DNA topoisomerase VI subunit A family signature 118 135 IPR002815 GO:0003677|GO:0003918|GO:0005694
Ssu6g3563 366 PRINTS DNA topoisomerase VI subunit A family signature 214 235 IPR002815 GO:0003677|GO:0003918|GO:0005694
Ssu6g3563 366 PRINTS DNA topoisomerase VI subunit A family signature 190 207 IPR002815 GO:0003677|GO:0003918|GO:0005694
Ssu6g3563 366 PRINTS DNA topoisomerase VI subunit A family signature 104 115 IPR002815 GO:0003677|GO:0003918|GO:0005694
Ssu6g3563 366 Pfam Type IIB DNA topoisomerase 81 141 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Ssu6g3563 366 PRINTS SPO11 homologue signature 286 310 IPR013048 GO:0003677|GO:0003918|GO:0042138
Ssu6g3563 366 PRINTS SPO11 homologue signature 347 366 IPR013048 GO:0003677|GO:0003918|GO:0042138
Ssu6g3563 366 PRINTS SPO11 homologue signature 251 270 IPR013048 GO:0003677|GO:0003918|GO:0042138
Ssu6g3563 366 PRINTS SPO11 homologue signature 204 219 IPR013048 GO:0003677|GO:0003918|GO:0042138
Ssu6g3563 366 PRINTS SPO11 homologue signature 110 130 IPR013048 GO:0003677|GO:0003918|GO:0042138
Ssu6g3563 366 Gene3D - 9 143 IPR036388 -
Ssu6g3563 366 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 14 362 IPR002815 GO:0003677|GO:0003918|GO:0005694
Ssu6g3563 366 SUPERFAMILY DNA topoisomerase IV, alpha subunit 79 360 IPR036078 GO:0003677|GO:0005694
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3563 Ssu-Chr6 79244818 79248167 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3563 K10878 - gmx:100813920 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3563 6 79244818 79248167 Ssu6g3563 6 79244818 79248167 ECH