Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3550 ATGGCAGTCGAATCTTGGGTTCTGAGTCACCAAGTTTTCATCTCCAGTTCCAGATTGTTTTACCCTGCGCATGAGAATGAGCGAAAGAGCATGCCAATCAAAGTTTTGGGTAGAAACAATAGATACCCATTTCCCTTTGTGTCCAATTGTGTTGGTCCATCCACTTTTACAAGCCTTCAGGTTTCAAGCTTTGGAGCAGATACCAAGTTACTAGATGGAACTCGGTTGAGGTGTTTAGGTGGTAGCAGCGATTGTTTGAGCGATAGAAATGCTGTTTCCAAAGCCAATTTGAACTTTATACAGGAATTGTTGAAGAGGGGAATCATCCTGGCTGCAACAGTTTGTGGAATATTGGTGTTTGGATGTCCGCGAGTTTTTGCTACTGAAGGTGTTGTGAATGCAGGATATGGTGTTATTGGACAGAGCATACTTTTGCTTAGGAATACATGGCCTAAAGTGTTGCAAGTTCTTCGTATATTTAAGGAGCAAGGGTTGGTGCTGGCAGTGCTTTTGGGCCTTTCAGCTTTTTTCTCTATGGCAGAGACTTCAATCACTACACTTTGGCCTTGGAAGGTTCGTGAGTTGGCTGAAAAGGAGTCTGAAAATGGCGTCTTCAGACTACTCCGAAGTGACGTTACTCGATTCCTTACAACAATACTTATTGGCACAACGGTGGTCAATATTGGGGCAACTGCTCTGGTCACTGAAGCAGCAACTGCTATATTTGGTGAAGCTGGTGTTAGTGCAGCAACAGGAGTGATGACTGTTGCCATTTTGCTTCTCACTGAAATCACTCCAAAAAGCATAGCTGTTCATAATGCCACAGAGGTGGCTCGGTTCGTGGTCAGGCCAGTGGCATGGCTTTCCCTCGTGTTGTATCCTGTAGGAAGAATTGTTACTTATCTTTCAATGGGGATGCTGAAATTGCTTGGCCTAAAAGGAAGAAGTGAGCCATATGTAACTGAAGATGAGCTAAAATTGATGCTAAGAGGTGCAGAATTAAGCGGGGCAATAGAGGAGGAAGAACAGGATATGATTGAAAATGTGTTAGAGATAAAAGACACACATGTCAGAGAGGTTATGACACCTcttgttgatgttgttgcaaTTGATGCAAGTTTAAGCCTGGTAGACTTTCATCAGTTGTGGGTCACACATCAGTACTCAAGGGTACCTGTTTTTGAGCAGCGTGTTGATAATATAATGGGTATAGCATATGCAATGGATCTGCTGGATTATGTTCAAAAGGGCGAGTTGCTAGAAAGTACTACAGTTGGCGATATGGCTCACAAGCCAGCATATTTTGTACCTGATTCAATGTCTGTTTGGAATCTTCTTAGAGAGTTCAGAATTAGGAAGGTTCACATGGCAGTTGTTCTTAATGAATATGGTGGAACTGTGGGGGTTGTAACTCTCGAAGATGTTGTTGAGGAAATTGTTGGTGAAATCTTTGATGAAAATGACTCAAAGGAGGAGATACAGAAAAAAACTGGCTACATAGTAATGCGAGCTGAGGGTGTTTTTGATGTGGATGCAAACACGTCCATTGATCAGCTCTCTGAAGATTTGAACATTAAGATGCCAGAGGGTCACCAATATGAGACAGTATCAGGCTTTGTTTGTGAAGCATTTGGATACATTCCAAGGACAGGTGAGTGCATCAAAGTAGTTCTTGAAAGGGAagatgaagatgataacaatgagTCCAATGCTGACCAGCAGGATCAGAAGGTGAAGAACCAGATTTTCAAACTTGAGGTAATCAGTCGTCTGTTGCCATCTAAAATTTTGTCACTTAAGGTAGTCTTACTGATTTTTGCTTATATCTGTCCAAAGTTGGAGAGAACGGATGGTGAGCACATAAATAATATCAGCAAGTATAATGATAGCATAACACAATTACAGTATACTTGCATGCACCTTCTTTATAATATGATTACTCTACTATTACTCAAGCTACACTAA 1965 0.4081 MAVESWVLSHQVFISSSRLFYPAHENERKSMPIKVLGRNNRYPFPFVSNCVGPSTFTSLQVSSFGADTKLLDGTRLRCLGGSSDCLSDRNAVSKANLNFIQELLKRGIILAATVCGILVFGCPRVFATEGVVNAGYGVIGQSILLLRNTWPKVLQVLRIFKEQGLVLAVLLGLSAFFSMAETSITTLWPWKVRELAEKESENGVFRLLRSDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAILLLTEITPKSIAVHNATEVARFVVRPVAWLSLVLYPVGRIVTYLSMGMLKLLGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDASLSLVDFHQLWVTHQYSRVPVFEQRVDNIMGIAYAMDLLDYVQKGELLESTTVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRAEGVFDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGECIKVVLEREDEDDNNESNADQQDQKVKNQIFKLEVISRLLPSKILSLKVVLLIFAYICPKLERTDGEHINNISKYNDSITQLQYTCMHLLYNMITLLLLKLH 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3550 654 ProSiteProfiles CBS domain profile. 428 486 IPR000644 -
Ssu6g3550 654 Gene3D - 498 591 IPR016169 -
Ssu6g3550 654 ProSiteProfiles CNNM transmembrane domain profile. 156 342 IPR002550 -
Ssu6g3550 654 PANTHER HEMOLYSIN-RELATED 93 589 - -
Ssu6g3550 654 Pfam CBS domain 357 415 IPR000644 -
Ssu6g3550 654 Pfam CBS domain 425 480 IPR000644 -
Ssu6g3550 654 SUPERFAMILY FAD-binding/transporter-associated domain-like 499 557 IPR036318 GO:0050660
Ssu6g3550 654 Pfam Transporter associated domain 502 559 IPR005170 -
Ssu6g3550 654 ProSiteProfiles CBS domain profile. 361 422 IPR000644 -
Ssu6g3550 654 Gene3D - 336 491 IPR046342 -
Ssu6g3550 654 Pfam Cyclin M transmembrane N-terminal domain 166 342 IPR002550 -
Ssu6g3550 654 CDD CBS_pair_CorC_HlyC_assoc 356 477 IPR044751 -
Ssu6g3550 654 PANTHER BNAC03G73630D PROTEIN 93 589 - -
Ssu6g3550 654 SUPERFAMILY CBS-domain pair 344 483 IPR046342 -
Ssu6g3550 654 SMART CorC_HlyC_2 501 605 IPR005170 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3550 Ssu-Chr6 78873099 78882214 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3550 - - gmx:100778907 1065.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3550 6 78873099 78882214 Ssu6g3550 6 78873099 78882214 ECH