Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3543 ATGGAGACGTCGAAGACGATCTCCGCCGCTCTGAAACGCGTCGACGCGAAGAAAGAGAATCTGAAGAAAGCCTACGACGATCTCCAAGCGCACTCCTCCCTCCTCTCCTCCTCCGCCTTCCCTCTCTCGTGGTCCCACCTCGACGCCCACTTCACCTCCCTCCAAACCTCCCTCTCGCAGCGCTTCCACCTCCTCCAGTCCCTCGAATCCCGGCACACCGACCCACCGCCCTCTCCCTCCCCCGCCGACCGGTCGCAGGAAAACGGCGCCCCCGCACTGCCCAGGACCCACACCGAAGAGCTGACCGCGCTCTGCAGCGAGATGAACGGCAGGGCGCTGAGGGACTACGTCGTGGAGCATCTGAAGGACAAGGCCGCGGTCGAGGTCGCGCTCCAGAGCGCCCTCGGGTGCGCCGCCGATCCCGCGTCCGTCGTTCTCGATTCCCTGGACGGCGTTTTCGGCGCGAAAGACGACAAGGAGCTGCGCAAGATGAAGAGGAGCTGCGGCGTGCTGTTCCAGCAGCTGAGGGCCGCCGCGGCGTTGCCGGCGAGTTTCAAGGCGAGGAAGAGGGCGAAGAGGCTGTGCGCGGAGTGGAAGGGGAGCCTGGCGGGCGACGGGGGCGCGGACGGCGTTGGGGCGATGGCTTTCTTGCATTTCGTGGCGGCTTTTGGGTTGGTCTCTGAACTGAGCGTGAATGAGATCGTCACTTTCTCTGCCGCGGCTGCTGCCAATGACGAGCTTCCTGAGCTGTACCGGAGCGTTGGTTGGATGGACAAAGTTCCAGCTCTTGTTCAGAAACTTATTGACAGGTGCAAACATATTATGGCTGTCAAGTATATTTTTGAGTTCAATCTTGCTGATAAGATTCCACCAGTTCCCATTTTGAAAGCTCATGTGAATGAGTCTCAGAAACTTGCTAAAAGACTTTCCGAGGAAGGAAAGTCACTTAATGAGATCACGGCGAGAGAAATCCATGCATTGAAATCGGCGATTAAGGTTATTGAGAGTCATAATCTTGAATCTGAATATCCACCGGAAAGCCTTCAACAGCGTATAGAGCAATTGATGAAGCATAAGGCAAATGTAAAATATGCTGCATCAGCTTTTTCCGCAAAGCCTCCTCAGCATCAGCAGCAACAAAGTGGGATCAAGCGTCCTAGAATGTCTGCTCCTGTTGGTTCTGCAGCTGTCCTGAGTAGTGTCAGTGGTGCCAGTTCAACCGCTCACCACTACCAACAACCTCATTTCCAGTCATCAGGTTTGTTGCCGGAACATCTAAATCCGTACATGAACTTGCCAACCATGCCATATGGCATGAAGGCTCCAACCCCAACCATCTCGCCTTATACAGGCGCTTCAACTGGGCCTTATGGTCTTGATGGTGTCCCAATGGGTCCCAGTGGCAACCTTGGTCAAGGTGGTTCTCTTCCAAATTCAGCAGAGCCACTTATGCCGTCTGGTTATTATGATAGTGTCTCTGCTTATGGTGGTTATGGTCTACAAAATTATTACCAAACATCTTATCCTCAGTAG 1533 0.546 METSKTISAALKRVDAKKENLKKAYDDLQAHSSLLSSSAFPLSWSHLDAHFTSLQTSLSQRFHLLQSLESRHTDPPPSPSPADRSQENGAPALPRTHTEELTALCSEMNGRALRDYVVEHLKDKAAVEVALQSALGCAADPASVVLDSLDGVFGAKDDKELRKMKRSCGVLFQQLRAAAALPASFKARKRAKRLCAEWKGSLAGDGGADGVGAMAFLHFVAAFGLVSELSVNEIVTFSAAAAANDELPELYRSVGWMDKVPALVQKLIDRCKHIMAVKYIFEFNLADKIPPVPILKAHVNESQKLAKRLSEEGKSLNEITAREIHALKSAIKVIESHNLESEYPPESLQQRIEQLMKHKANVKYAASAFSAKPPQHQQQQSGIKRPRMSAPVGSAAVLSSVSGASSTAHHYQQPHFQSSGLLPEHLNPYMNLPTMPYGMKAPTPTISPYTGASTGPYGLDGVPMGPSGNLGQGGSLPNSAEPLMPSGYYDSVSAYGGYGLQNYYQTSYPQ 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3543 510 Coils Coil 11 31 - -
Ssu6g3543 510 MobiDBLite consensus disorder prediction 368 390 - -
Ssu6g3543 510 MobiDBLite consensus disorder prediction 371 385 - -
Ssu6g3543 510 MobiDBLite consensus disorder prediction 69 95 - -
Ssu6g3543 510 PANTHER FRIGIDA-LIKE PROTEIN 3-RELATED 1 507 - -
Ssu6g3543 510 PANTHER FRIGIDA-LIKE PROTEIN 1 507 - -
Ssu6g3543 510 Pfam Frigida-like protein 98 365 IPR012474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3543 Ssu-Chr6 78803254 78805622 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3543 - - gmx:100808558 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3543 6 78803254 78805622 Ssu6g3543 6 78803254 78805622 ECH