Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3536 ATGGCGACGCCGGATTCTGACGCTGCCTCTGAGCCTCAAGATCCTGACTCTGTCTCCAATCCTCCCAACGCCCTCGTCCCAGCCGCTCCCGCCGTTTGCCTTCTCCGCTTTGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTCGGATACGGTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCGGGGTCTTATGCGAAGACATTTGCAGTTTTGTCTGGAGTTCATAGTTTGGTTGTTTGCATCTTGAAAAGACTGAGAGGAAAGGATGATGTCATTAATGCGGGGGTAGCTGGATGTTGCACTGGTCTTGCTCTAAGTTTTCCAgGTGCACCACAAGCTCTTCTGCAGAGCTGCCTCACTTTTGgggcattttcttttattatggaAGGGCTAAACAAACAGCAGCCAGCACTTGCAGTTCCCATGTCCTGGAAAAGAACTGTGCAATACAATGTACGTCCTCCCTTGGCACTCCCCCTTCAACTTCCTCTTCCAGATGAGCTAAAAGAAGCCTTCTCCTTTTTCTCCGAATCTTTGAAGAAGCGCAACAAGGGATCTCgtTCCTTGCAGTTTTTATCAacatttctttttgaagaacTTAAGGGTGACAACAAATTGTTCAAGGACATGGATTGTTTACATGTTACTGAGTTCCAATATGGGCACCGCAAGCAGCAACATCATAGTGTGCAAAACCACATAAGCAGAAGGTTTTCAATGGCTACTGTGAGAAGTCTGAAGATCAAGACAAGTACGTGCAAACGTATAGTGAAGGAGCTGCATTCTTATGAGAAGGAAGTTGAGAGAGAAGCTGCCAAAACAGCTGACATGAAGGAAAAAGGAGCTGACCCTTATGACCTCAAGCAGCAGGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGCCTTGAGGCTGCTTTGGCAGACTTGAAAGGAATATTGGCTGAGTTGGAGGAGTCAGATGAGAACTCCGGTCCTGAAATTGATGAAGCTCGAAACACCATTGTAGAAGTTGAAAAAGTATTTGAAACAACAGAAGGTTAG 1086 0.4558 MATPDSDAASEPQDPDSVSNPPNALVPAAPAVCLLRFATDSAGGALMGSVFGYGAGLFKKKGFKGSFVEAGSYAKTFAVLSGVHSLVVCILKRLRGKDDVINAGVAGCCTGLALSFPGAPQALLQSCLTFGAFSFIMEGLNKQQPALAVPMSWKRTVQYNVRPPLALPLQLPLPDELKEAFSFFSESLKKRNKGSRSLQFLSTFLFEELKGDNKLFKDMDCLHVTEFQYGHRKQQHHSVQNHISRRFSMATVRSLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLEAALADLKGILAELEESDENSGPEIDEARNTIVEVEKVFETTEG 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3536 361 Pfam Tim17/Tim22/Tim23/Pmp24 family 37 134 - -
Ssu6g3536 361 Pfam Tubulin binding cofactor A 251 349 IPR004226 GO:0007021|GO:0007023|GO:0048487
Ssu6g3536 361 PANTHER CHLOROPLASTIC IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22-2-RELATED 10 180 - -
Ssu6g3536 361 Coils Coil 314 337 - -
Ssu6g3536 361 SUPERFAMILY Tubulin chaperone cofactor A 251 347 IPR036126 GO:0007021|GO:0007023|GO:0048487
Ssu6g3536 361 MobiDBLite consensus disorder prediction 1 21 - -
Ssu6g3536 361 PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22 10 180 IPR039175 GO:0042721|GO:0045039
Ssu6g3536 361 Coils Coil 262 289 - -
Ssu6g3536 361 Gene3D - 247 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3536 Ssu-Chr6 78705683 78710444 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3536 5 193 Miscellaneous Gene Families AT4G26670 64.921 8.16e-79 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3536 K17790 - gmx:100813557 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3536 6 78705683 78710444 Ssu6g3536 6 78705683 78710444 ECH