Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3534 ATGTGGAAACCACGCGCTCTTTCTGCTCCACTCGCCGTGCTTCTTCTTCACACGCTCCTTGCTCTGGTCTCTGCTCAGAGATCTGTCTGGAACACACTCAACGGAGGTACACCGGTGGTTGTAGCTCGTGGTGGATTTTCGGGGATATTCCCGATTCCAGTGCTGGGAGTATACTCTCGATCCAACCTGTTTGATGGCCTCGGTTTTCCAATTCTTACTATTGAAGATTTAGTTACattaaaccaaaaaccaaaaggaATATGGTTGAATATTCAGCATGATGCATTTTACACACAACACAATTTGAGTATGAGAAAAGTTGTGCTTTCGGCTTCTAAAAGCATAGTTTTCAGTTATATCTCATCACCTGAGGTTGGTTTTCTGAGAAGTATAACAACACGCTTCAacccaaaaaaaacaaaactggTCTTCAGGTTTATGGATGTGGGTGACACAGAACCATCAACCAATCAGACTTATGATGCACATAATGCAGGGCTGGAAGTTTTTGCATCAGATTTTGTGAATGATGTTCCATCTAGCTTTAATTACAGTTATGATCCTCTTACCGAGTACCTCCAATTCATAGATAATGGTGACTTCTCTGTTGATGGTGTGCTGTCTGATTTTCCCATAACTCCATTTGAAGCTATAgGTTGCTTTGCTCACCTAGGCACCAATGCTACGAAAACAGGTAAAACTTTGATCATCTCAAAATATGGAGCAAGTGGAGATTATCCTGCTTGTACCGACTTAGCATATAAGCAGGCCATATCTGATGGTGTGGATGTTCTTGACTGTCCTGTTCAAATGTCCAAGGAGGGAACACCATTTTGCTTAAACTCCATTGATCTTATAGAGAGTACAACAGTCGCCCAATCAAGCTTCAGCAAATTTGCCATGACTATCCCTGAGATCAAATCTGGCAGTGGCATATTTGCATTCAACTTGACatggaatgaaataaaagacTTGACCCCCTCAATATTGAACCCTTTTGCAAAATACAGATTGTTCAGGAATCCTAAAAATAAGAATGCTGGGAAATTGGTGAGGTTATCAGATTTCTTGTCCTTAACACAAAATCAGACTTCTCTATCAGGTGTCGTGATCATTGTCGAGACAGCAGGTTATGATAAACCAGGACCCCAAAAGGTTTATATTCAATCCACTAATAGCTCTGTACTGCTGAACTTCAAGGAGAAAACCAGTTATGAGCTTGTCTACAAGATTGACGAGAATGTTGGTGATGCTGCTAATGCAGCTGTCAAGGATATAAAAAGCTTCGCTAGTTCTGTTATTGTCAGCAAGGACTCTGTATTTTCTAGTAACAGTAAATTCCTGACAGGCTCTACAAAGATTGTGCCAAAGCTAAAAGCTGCTAACCTCTCAGTTTTTGTAGAAACATTCAGCAATGAGTTTGTGTCTCAAGCATGGGATTTCTTCTCAGATGCAACTGTTGAGATCAACTCATATATTCAAGAAGCAACAATTGATGGTATCATCACAGACTTTCCTAAAACTGCTGACAGATACAGAAGGAACAAATGCTTAAATTTGGGTAACAACACACCTCCTTACATGGAATCTGTTCAACCAGGTGGTCTTTATTCACTCATTACCAAAGATTACTTGCCTCCAGCTGCGGCTCCACTCCCACCCTTGACAGAGTCTGAAGTGACAGAGCCACCTGTGCCTTCTGTTGCTAAAATAGCCCCAGCTTCCAGCCCAAGTGCTGAATCCAGTGCACCACCGGGAAATGCACAGCCTAAGGTCGCTGTCTGGTTCTTCGTCCACTCTGGCTGTGTTTATAGCTTCTCTTCTTCTGCTTTGAGTAAAATCATATCTAAGCTTCCTTctaaagaaaaggagaaaatgttGCTTTTGCCGGTTTCAACCGTCTATTTCCCCAACTCTTCTAGGATTGAGTGGCATGAAGCTTTCGGCTTCAGACTACATGAACAATCtacattttttgttcttaaaaggGGCAAATTCTTTCAATCTTATTTGTTGTAG 2019 0.3982 MWKPRALSAPLAVLLLHTLLALVSAQRSVWNTLNGGTPVVVARGGFSGIFPIPVLGVYSRSNLFDGLGFPILTIEDLVTLNQKPKGIWLNIQHDAFYTQHNLSMRKVVLSASKSIVFSYISSPEVGFLRSITTRFNPKKTKLVFRFMDVGDTEPSTNQTYDAHNAGLEVFASDFVNDVPSSFNYSYDPLTEYLQFIDNGDFSVDGVLSDFPITPFEAIGCFAHLGTNATKTGKTLIISKYGASGDYPACTDLAYKQAISDGVDVLDCPVQMSKEGTPFCLNSIDLIESTTVAQSSFSKFAMTIPEIKSGSGIFAFNLTWNEIKDLTPSILNPFAKYRLFRNPKNKNAGKLVRLSDFLSLTQNQTSLSGVVIIVETAGYDKPGPQKVYIQSTNSSVLLNFKEKTSYELVYKIDENVGDAANAAVKDIKSFASSVIVSKDSVFSSNSKFLTGSTKIVPKLKAANLSVFVETFSNEFVSQAWDFFSDATVEINSYIQEATIDGIITDFPKTADRYRRNKCLNLGNNTPPYMESVQPGGLYSLITKDYLPPAAAPLPPLTESEVTEPPVPSVAKIAPASSPSAESSAPPGNAQPKVAVWFFVHSGCVYSFSSSALSKIISKLPSKEKEKMLLLPVSTVYFPNSSRIEWHEAFGFRLHEQSTFFVLKRGKFFQSYLL 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3534 672 SUPERFAMILY PLC-like phosphodiesterases 233 513 IPR017946 GO:0006629|GO:0008081
Ssu6g3534 672 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3 14 51 - -
Ssu6g3534 672 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3 161 378 - -
Ssu6g3534 672 ProSiteProfiles GP-PDE domain profile. 1 241 IPR030395 GO:0006629|GO:0008081
Ssu6g3534 672 SUPERFAMILY PLC-like phosphodiesterases 45 216 IPR017946 GO:0006629|GO:0008081
Ssu6g3534 672 MobiDBLite consensus disorder prediction 553 586 - -
Ssu6g3534 672 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 56 161 - -
Ssu6g3534 672 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 374 602 - -
Ssu6g3534 672 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 14 51 - -
Ssu6g3534 672 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 161 378 - -
Ssu6g3534 672 Pfam Glycerophosphoryl diester phosphodiesterase family 375 508 IPR030395 GO:0006629|GO:0008081
Ssu6g3534 672 Pfam Glycerophosphoryl diester phosphodiesterase family 241 362 IPR030395 GO:0006629|GO:0008081
Ssu6g3534 672 Gene3D Phosphatidylinositol (PI) phosphodiesterase 372 512 IPR017946 GO:0006629|GO:0008081
Ssu6g3534 672 Gene3D Phosphatidylinositol (PI) phosphodiesterase 233 371 IPR017946 GO:0006629|GO:0008081
Ssu6g3534 672 Gene3D Phosphatidylinositol (PI) phosphodiesterase 56 217 IPR017946 GO:0006629|GO:0008081
Ssu6g3534 672 ProSiteProfiles GP-PDE domain profile. 234 513 IPR030395 GO:0006629|GO:0008081
Ssu6g3534 672 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3 56 161 - -
Ssu6g3534 672 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3 374 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3534 Ssu-Chr6 78679422 78685222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3534 12 92 Receptor kinase-like Gene Family AT4G26690 36.047 4.52e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3534 - - gmx:100792750 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3534 6 78679422 78685222 Ssu6g3534 6 78679422 78685222 ECH