Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3519 ATGGCGAACGAGAACGAACCCGCGAAGCTGCTGTTACCATACCTTCAACGCGCCGATGAATTGCAAAAGCACGAACCCCTCGTCGCTTATTACtGTCGATTATATGCGATGGAACGAGGGTTGAAGATTCCGCAAAGTGAGCGCACAAAGACCACTAATGCTCTTCTTGTTTCGCTCATGAAGCAGCTTGAAAAGGATAAAAAGTCAATCCAGTTGGGGCCAGAAGACAATTTATATCTCGAGGGATTTGCTTTGAATGTGTTTGGAAAAGCAGACAAGCAGGATCGTGCTGGAAGGGCAGATTTGAATACAGCAAAAACATTTTATGCTGCCAGCATCTTTTTTGAGATTCTTAATCAATTTGGAGCAGTTCAGCCTGATCTGGAGCAGAAACAGAAATATGCAGTGTGGAAAGCAGCTGATATAAGAAAAGCTTTGAAAGAAGGAAGGAAGCCCACAGCTGGCCCCCCTGCTGGTGATGAGGACTTGTCAGTTCCATTTAGTTCTTCAAGTGATAGATATGACCTTGGGACTACTGAAACTACTGTTTCCAGTCCTGGACCAGAATCTGGACCAGAATCTGATTCATCACGTAGTTATCATAACCCTGTCAACTACCAAAATCTGCCAAGCATTCATCCGGTACCTAAATTTCATGACACTGTTAACGACCAACATTCTGCAAACATTCCACCGTCTATGCCATTTCTTGATAGAGTAGATAATAACAAGCATTCTTCTGTTGTTTCTCCATCATCTCACTCTTACACACCTGCGGTTTATCCTTCGCAGGACTAccatcctcctcctccttcccAAGATTATCATTCTCCTCCACCTTCCCAAGACTATCATCCTCCTCCACCTTCCCAGGATTATCATCCTCCTCCACCTTCCCAAGATTACCATCCTCCTCCACCTTCCCAAGATTACCATCCTCCTCCACCTACCAGATCAGAGAGTTCTTATCCTGAGCTCTACAACCATCAGCAATACTCACCAGAACATTCACAGCATTTAGGTCCTAACTACCCTTCTCATGAAACTTCGTCTTATTCTTATCCCCATTTTCAGTCTTATCCAAGTTTTACTGAAAGCAGCCTTCCGTCAGTCCCATCAAACTATACTTATTATCAAGGGTCTGATGCTTCATATTCTTCCCAGTCGGCTCCGCTAAGTACAAACCATTCGTCAAGTGCTCAACACAGTTCCAGCAGCCGAAATGGAACTGCCGTGGAACCTAAGTCAACTACTCAGACATACCAGTATGACAGTAACTACCAGCCAGCACCTGAAAAAATAGCAGAGGCACACAAGGCTGCAAGATTTGCCGTTGGGGCACTGGCATTTGATGATGTCTCAGTTGCAGTAGACTTCTTGAAGAAATCACTTGAGTTGCTGACAAATCCATCAGCTGGCCAGTAA 1425 0.4386 MANENEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQSERTKTTNALLVSLMKQLEKDKKSIQLGPEDNLYLEGFALNVFGKADKQDRAGRADLNTAKTFYAASIFFEILNQFGAVQPDLEQKQKYAVWKAADIRKALKEGRKPTAGPPAGDEDLSVPFSSSSDRYDLGTTETTVSSPGPESGPESDSSRSYHNPVNYQNLPSIHPVPKFHDTVNDQHSANIPPSMPFLDRVDNNKHSSVVSPSSHSYTPAVYPSQDYHPPPPSQDYHSPPPSQDYHPPPPSQDYHPPPPSQDYHPPPPSQDYHPPPPTRSESSYPELYNHQQYSPEHSQHLGPNYPSHETSSYSYPHFQSYPSFTESSLPSVPSNYTYYQGSDASYSSQSAPLSTNHSSSAQHSSSSRNGTAVEPKSTTQTYQYDSNYQPAPEKIAEAHKAARFAVGALAFDDVSVAVDFLKKSLELLTNPSAGQ 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3519 474 MobiDBLite consensus disorder prediction 243 260 - -
Ssu6g3519 474 MobiDBLite consensus disorder prediction 321 352 - -
Ssu6g3519 474 Gene3D - 4 152 IPR023175 -
Ssu6g3519 474 MobiDBLite consensus disorder prediction 375 429 - -
Ssu6g3519 474 Pfam Vta1 like 13 148 IPR039431 -
Ssu6g3519 474 Coils Coil 472 474 - -
Ssu6g3519 474 MobiDBLite consensus disorder prediction 148 352 - -
Ssu6g3519 474 Pfam Vta1 C-terminal domain 431 468 IPR041212 -
Ssu6g3519 474 MobiDBLite consensus disorder prediction 375 427 - -
Ssu6g3519 474 MobiDBLite consensus disorder prediction 263 320 - -
Ssu6g3519 474 MobiDBLite consensus disorder prediction 164 209 - -
Ssu6g3519 474 Gene3D Immunoglobulin FC, subunit C 430 469 - -
Ssu6g3519 474 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 299 472 IPR044538 GO:0032511
Ssu6g3519 474 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 1 322 IPR044538 GO:0032511
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3519 1 118 Glycosyltransferase AT2G31960 25.984 1.36e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3519 K12199 - gmx:100783739 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3519 6 78333074 78335621 Ssu6g3519 6 78333074 78335621 ECH