Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3517 ATGAGAGATATACATACGGATAATTACTGTAGTTCACCAAGACCGCCAAATGTTCGGCTAAGAAGACGCTCAAATGAGATTCCTCCGGAGATAAGCAAATCAAATGGAAACTATTTACTTGTCGATGATAGATATAAATACAGATCAATGTGGATCCGTGCATACTCATCTCTGTGGATGCTAGCGAGTGTCTCACTTATCATATACTTGGGTCATCTTTACATCTGGGCCATGGTTGTTGTTATCCAAATACTTATGGCCAGTGAGCTCTTCAATCTCCTGAAAAGAGCTAATAATCAAGATAAACGTCTCCCTAAGTTTAAGCTCTTGAACTGGCATTTTTTCTTCACAGCAATGCTATACGTATATGGCCGTATTCTCAGTCAACACCTTGTGAAGACAGTGATCTCAGATAAATTCTTCTATAGACTTGTGAGCAACCTGATAAAGTATCAGATGGTTATATGTTACTTCTTATATATTGCAGGTTTTGTATGGTTTAttctttcattaaagaaaagatattaCCAGTATCAGTTTGGCCAGTATGCATGGACACATATGATACTTATTGTTGTGTTTACCCAGTCTGCGTTCACTGTAGCCAATATATTTGAAGGGATATTCTGGTTTCTTTTCCCTGCATCCCTTATTGCTATGAATGATGTTGGTGCATATTTCTTCGGTTTCTTTTTTGGGAGAACACCTCTGATCAAGCTGTCTCCAAAGAAAACATGGGAAGGTTTCATTGGAGCATCTGTTGCCACTATGATTGCTGCATTTACGTTTGCAAACTTCTTGGGTCGCTTCCAGTGGCTAACATGTCCAAGGAAGGATTTATCAACTGGTTGGCTTCAGTGTGACCCAGACCCAATTTTTAAGCCAGAGTACATTCCATTGCCAGGATTGATTTCTCATTGGCTTCCTTGGAAAGAGATAGCATTTTTGCCAGTACAGTGGCATGCCTTGTGGATGGGACTATTTGCATCAATCATAGCACCATTTGGAGGTTTTTTTGCCAGTGGTttcaaaagagcttttaaaATCAAAGACTTTGGTGATAGTATACCCGGACATGGTGGATTTACAGACAGAATGGACTGCCAGATGGTAATGGCTGTTTTTGTCTACATTTACCATCAGTCATTTGTTGTTGCCCAAGACTATTCAGTTGAGATGTTTTTGGACCAGATAATGAGGAACCTTGGCTCAGAGGAGCAGCTAGCTCTCTACACAAAACTCGGGCAGATATTGCAAGAAAGGCGTTTTATCCAGTCATGA 1281 0.3927 MRDIHTDNYCSSPRPPNVRLRRRSNEIPPEISKSNGNYLLVDDRYKYRSMWIRAYSSLWMLASVSLIIYLGHLYIWAMVVVIQILMASELFNLLKRANNQDKRLPKFKLLNWHFFFTAMLYVYGRILSQHLVKTVISDKFFYRLVSNLIKYQMVICYFLYIAGFVWFILSLKKRYYQYQFGQYAWTHMILIVVFTQSAFTVANIFEGIFWFLFPASLIAMNDVGAYFFGFFFGRTPLIKLSPKKTWEGFIGASVATMIAAFTFANFLGRFQWLTCPRKDLSTGWLQCDPDPIFKPEYIPLPGLISHWLPWKEIAFLPVQWHALWMGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGFTDRMDCQMVMAVFVYIYHQSFVVAQDYSVEMFLDQIMRNLGSEEQLALYTKLGQILQERRFIQS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3517 426 ProSitePatterns Phosphatidate cytidylyltransferase signature. 341 367 IPR000374 GO:0016020|GO:0016772
Ssu6g3517 426 PANTHER PHOSPHATIDATE CYTIDYLYLTRANSFERASE 3 6 424 - -
Ssu6g3517 426 PANTHER PHOSPHATIDATE CYTIDYLYLTRANSFERASE 6 424 IPR016720 GO:0004605
Ssu6g3517 426 PIRSF CDP-DAG_synth_e 11 426 IPR016720 GO:0004605
Ssu6g3517 426 Pfam Cytidylyltransferase family 52 383 - -
Ssu6g3517 426 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3517 Ssu-Chr6 78297831 78305797 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3517 2 421 Lipid Metabolism Gene Families AT4G26770 72.917 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3517 K00981 - gmx:100805363 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3517 6 78297831 78305797 Ssu6g3517 6 78297831 78305797 ECH