Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3516 ATGGAGCTGTGCACCCGAACCTTCACAAGTTTCCTTCTTTTCAACGCATCTTTCTCTTCAAACTCTCTTCTTGTTCGTGCCAATGCCAACGTTACACCCTTCAAATTCAATTCCGTGAAACTCTCGTCTTTATCGCCTCATATTCACCTCTTTCAACCCTTTCCCTCTCGTCAGAGTTCTTCTCCCTTCACACTCTCagcttcctcttcttcttcagtTGCACTTGGCCCAGAACAGGACCGTCTTCCAGCAGAATTGAAGATCACTGAAACAGAGGAACCCAATTCCAGAGTAAGATTGCATGTGGAGGTGCCTCCATTGGTATGCGAGGATTGTTACAAAAGGGTTATAGCAGAGTTTATGAAGCAAGCAAAGATCCCTGGATTTCGCCCTGGAAAGAAAGTTCCAGAAAGCATTCTTATCAGTTATGTTGGGAGGCAAAATGTTCAGAAGGCTACTATTGAATCTGTATTGAGGAGGACACTTTCACATGCTACAACATCCgTTACTGGAAGGGCTTTGCAGGACTCAGTACGTATAGTGACTAAATTTTCTGAGATGGAGGAGACATATTCTTCTCTTGGGTCTCTTAGATATGATGTCGTTGTTGATGTTGCACCAGAAATCAAATGGATTCCCGATAATAAtgcatacaaaaatttaaagattgtTGTTGAGATAGATAGTGATATAGATGCTCACAGAGCATCTGAACAAGAATTTAGAAGGCATTACAAGTCCATTGGTTCACTGAAAGTGGTTACTGACAGAGGGCTACAGGTTGGTGATGTTGCTGTCCTTGACATCTCAGCAACAACCATTGATCCAGATGaatcaaatgttaaaaatattccttCTGCTGAAAGTAAAGgctttaattttgatacagAAGATGGTGATAAAGTATTACCGGGTTTCCTTGATTCTATAATTGGAATTCAACGAGGTGAATCAAAGTCTTTTCCTCTTGTATTTCCTGAAACATGGAAGCAAGAAAATCTTCATGGTGTTCATGCTCAGTTTACAGTTGAATGCAAAGAGCTTTTTTACAGAGATTTACCAGAGCTGGAAGATTCTATTGCTGATAAGCTTCTCCCTAGATGCACCACGGTGGAGCAGGTCAAAGACTACTTGTTACAGAGATGCCTAGAGCTGGAGCAAACAGCTAGAGAACAAGCAACTGATAATGCTATCTTAGATCAGATCTCTAAGATGGTAGAGGTTGATATACCTCAATCCTTGTTTGAGGAACAAGGTAGGCAGCTTTATGGAGCCAACCTATTAGAAATACAGGCAAAAATGAAACTAAATGAGCAGCAGCTGGCATCTCTGTCAAGTCCAAAGGCTGTGAATGAATATCTTCAGCATCAGAaggaaaatataacaaatttgatAAAACAGAATCTGGCAGTTGGCGACATATACAGGCGTGAAAATCTGCAGTTTGCTACTGAGGACCTCGTCAAAGAGGTTGAGAATTCAATTGCTGAATTCAAACGTCAAAAACAAGAATATGATGAGGAACGGGTGAAAGATCAGGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACACGCAGAGATTCAGTATATAACTAGATGA 1617 0.3884 MELCTRTFTSFLLFNASFSSNSLLVRANANVTPFKFNSVKLSSLSPHIHLFQPFPSRQSSSPFTLSASSSSSVALGPEQDRLPAELKITETEEPNSRVRLHVEVPPLVCEDCYKRVIAEFMKQAKIPGFRPGKKVPESILISYVGRQNVQKATIESVLRRTLSHATTSVTGRALQDSVRIVTKFSEMEETYSSLGSLRYDVVVDVAPEIKWIPDNNAYKNLKIVVEIDSDIDAHRASEQEFRRHYKSIGSLKVVTDRGLQVGDVAVLDISATTIDPDESNVKNIPSAESKGFNFDTEDGDKVLPGFLDSIIGIQRGESKSFPLVFPETWKQENLHGVHAQFTVECKELFYRDLPELEDSIADKLLPRCTTVEQVKDYLLQRCLELEQTAREQATDNAILDQISKMVEVDIPQSLFEEQGRQLYGANLLEIQAKMKLNEQQLASLSSPKAVNEYLQHQKENITNLIKQNLAVGDIYRRENLQFATEDLVKEVENSIAEFKRQKQEYDEERVKDQVQEILEGAKVLEWLREHAEIQYITR 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3516 538 Hamap Trigger factor [tig]. 86 534 IPR005215 GO:0015031
Ssu6g3516 538 Gene3D - 218 533 IPR037041 GO:0006457|GO:0015031
Ssu6g3516 538 Gene3D - 84 209 IPR036611 GO:0006457|GO:0015031
Ssu6g3516 538 SUPERFAMILY FKBP-like 253 356 - -
Ssu6g3516 538 Coils Coil 488 508 - -
Ssu6g3516 538 Gene3D - 247 354 IPR046357 GO:0003755
Ssu6g3516 538 Pfam Bacterial trigger factor protein (TF) C-terminus 370 527 IPR008880 GO:0006457|GO:0015031
Ssu6g3516 538 PANTHER TRIGGER FACTOR-LIKE PROTEIN TIG, CHLOROPLASTIC 70 537 - -
Ssu6g3516 538 PANTHER TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE 70 537 IPR005215 GO:0015031
Ssu6g3516 538 SUPERFAMILY Trigger factor ribosome-binding domain 86 213 IPR036611 GO:0006457|GO:0015031
Ssu6g3516 538 SUPERFAMILY Triger factor/SurA peptide-binding domain-like 357 534 IPR027304 -
Ssu6g3516 538 Pfam Bacterial trigger factor protein (TF) 88 226 IPR008881 GO:0006457|GO:0015031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3516 K03545 - gmx:100805543 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3516 6 78290901 78297462 Ssu6g3516 6 78290901 78297462 ECH