Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3512 ATGTTCGTCCATAAGATTTTGTCCCGTGTCTCCACCATCATTTCCCGAACCTCGCTTCTCTCTGCTTCTCAAAGACCCCAACACTTGACCACCTTCTCCAATCACTTACATTCCCTCCTTCCCCAATCACGCAACAAGCTGGTTCCCATTCACGTCAATTTGTTTTTACCACTGATAAATTCATTATCAACTCCAAGATTTGGGTTTTCTTCATCAGCTTCAACTGAAACTAATGAcaaggaaaaaggaaataatgtgCATAATGGAGATTCTACAAATGATGACCCTGCAAAAGCAAATGAAGAGGTGAAGAATATGGATCAGGCCGGACAAGCTAAACCTACGGATAAAACAGAGGAATCAGGTTCTATTTCAGATTCTCAATCTCAAACTGTCAAAAGAAGGAGGAAAGGTTTTAAACGAACTGCATTTTCTGATTCAGATTCAGAGAATGAATCTGACCTATCCAGGGATGATCTAATTAAACTTTTGGCTGAGAAGGAAGAACTTGTGAAGTTTAAGCACAAGGAGATTGAAAAAATGCAGGATAAAGTTCTCAGAACTTACGCAGAGATGGAGAATGTCATGGATAGGACTAGACGTGAAGCagataattcaaaaaaatttgctaTACAGAATTTTGCAAAGAGTTTACTAGATGTTGCGGACAATTTGGGAAGAGCTTCCTCAGTTGTAAAggaaagtttttcaaaaattgatatgCCTAGCGACTCTGCTGAAGCGGTAAAACTCCTGAAAACACTTATGCAAGGTGTTGAAATGACCGAGAAACAATTATCAGAGGTACTTAAAAAGTTTGGTGTAGAAAAATTTGATCCTACAAACGAGCCCTTTGATCCACACAGGCATAATGCCATCTTCCAAATCCCTGATGGTTCTAAGCCTCCAGGAACTGTTGCAGCTGTTCTGAAGGCTGGATATATGCTTTATGATCGTGTTGTTCGCCCAGCGGAAGTTGGTGTAACCCAAGCAGTCGAGGATGAagagaaaaatggaaaagataGCATAGCTGATAAGGGCTCATAG 1047 0.3801 MFVHKILSRVSTIISRTSLLSASQRPQHLTTFSNHLHSLLPQSRNKLVPIHVNLFLPLINSLSTPRFGFSSSASTETNDKEKGNNVHNGDSTNDDPAKANEEVKNMDQAGQAKPTDKTEESGSISDSQSQTVKRRRKGFKRTAFSDSDSENESDLSRDDLIKLLAEKEELVKFKHKEIEKMQDKVLRTYAEMENVMDRTRREADNSKKFAIQNFAKSLLDVADNLGRASSVVKESFSKIDMPSDSAEAVKLLKTLMQGVEMTEKQLSEVLKKFGVEKFDPTNEPFDPHRHNAIFQIPDGSKPPGTVAAVLKAGYMLYDRVVRPAEVGVTQAVEDEEKNGKDSIADKGS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3512 348 MobiDBLite consensus disorder prediction 141 155 - -
Ssu6g3512 348 ProSitePatterns grpE protein signature. 285 328 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu6g3512 348 CDD GrpE 179 328 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu6g3512 348 Pfam GrpE 166 329 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu6g3512 348 MobiDBLite consensus disorder prediction 111 129 - -
Ssu6g3512 348 Gene3D - 146 273 IPR013805 -
Ssu6g3512 348 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 275 330 IPR009012 GO:0006457
Ssu6g3512 348 PANTHER GRPE PROTEIN HOMOLOG 1 105 - -
Ssu6g3512 348 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 167 274 IPR013805 -
Ssu6g3512 348 Coils Coil 164 184 - -
Ssu6g3512 348 Hamap Protein GrpE [grpE]. 94 330 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu6g3512 348 MobiDBLite consensus disorder prediction 80 102 - -
Ssu6g3512 348 Gene3D Head domain of nucleotide exchange factor GrpE 274 330 IPR009012 GO:0006457
Ssu6g3512 348 PRINTS GrpE protein signature 186 202 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu6g3512 348 PRINTS GrpE protein signature 282 297 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu6g3512 348 PRINTS GrpE protein signature 309 328 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu6g3512 348 PANTHER GRPE PROTEIN 126 332 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu6g3512 348 PANTHER GRPE PROTEIN HOMOLOG 126 332 - -
Ssu6g3512 348 MobiDBLite consensus disorder prediction 68 155 - -
Ssu6g3512 348 PANTHER GRPE PROTEIN 1 105 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3512 Ssu-Chr6 78048541 78052396 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3512 K03687 - gmx:100803396 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3512 6 78048541 78052396 Ssu6g3512 6 78048541 78052396 ECH