Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3510 ATGTCCAATTTGTCTCGCCAAGATCTTAAGCAGGTGTGGGCTATTGCAGATTCAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAGCTAGTTTCTTTGGCACAATCTGGGCACTCAATAACACATGATCTGCTGGCTAGTGATGttgattttaaaaatctgaaacCTCCCACAATGGAGGGTTTGGACGTGTTACTAGTTAAGAAAAAGCATAAACAAAAAGAGGTTGATGCAAATGGTAGTTCTCAATTGCAGCCATCACTATCAAGTAATTGGTTTAAttcaaagtcaacaaaaaagGTGCCTCTTTCCTCTGTGACATCAATAATTGATGGCTTGAAGAGACTCTACATTCAGAAGTTGAAGCCGTTAGAAGTTACTTACcgttttaatgattttgtttctCCAGTACTGACAAATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACACCTGCTTAAGAGTAGTTATCCAGGAGCACATATTGGACCTGAGCCTACAACTGATAGGTTTGTTGTCGTCATGTCTGGACTTGATGAGAGAAGCATTCCTGGAAATACTGTTGCTGTACAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGCACagcatttttgtcaaaatttgagTGTTCGCAAATGCCTCATCCTCTACTGGAACACATCACATTTGTTGACACTCCTGGAGTTCTAGCTGGAGAAAAGCAACGTACGCAACGGGCATATGATTTTACTGGTGTAACATCTTGGTTTGCTGCTAAGTGTGATTTGATACTCCTTCTATTCGATCCTCACAAACTTGACATCAGTGACGAGTTCAATCGTGTGATATCATCCTTACGGGGGCATGATGACAAAATTCGAGTGGTTTTGAACAAGGCAGACCAAATTGATACTCAGCAACTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGTGTGTATATTGGCTCCTTCAATGACAAGCCTGTAAATGATGCTGTCACCGGTCCAATCGGTAAGGAACTCTTTGAAAAGGAACAGGATGACCTTCTTTCAGATCTGAAAGATATACCAAAAGCGGCTTGTGATCGAAGAATCAATGAGTTTGTAAAACGGGCCCGAGCAGCCAAGATACATGCTTACATTATTAGTCATCTTAAAAAGGAGATGCCTGCTATGATGGGCAAAGCTAAAGCTCAGCAAAAGCTCATTGATAATTTGGCAGGTGAATTTGGAAAGGTACAAAGGGAGTTCCATTTACCTCCTGGTGACTTTCCAAATGTAGAGCATTTCAGAGAGATCTTGAGTGGTTACaatattgataaatttgaaaaattgaaaccGAAAATGATACAAGCAGTTGATGACATGCTAGCTTATGACATTCCTAACCTCTTGAAGAATTTTAGGAATCCCTAtgattaa 1500 0.3827 MSNLSRQDLKQVWAIADSKRQGYLGFTEFIIAMQLVSLAQSGHSITHDLLASDVDFKNLKPPTMEGLDVLLVKKKHKQKEVDANGSSQLQPSLSSNWFNSKSTKKVPLSSVTSIIDGLKRLYIQKLKPLEVTYRFNDFVSPVLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKSSYPGAHIGPEPTTDRFVVVMSGLDERSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEHITFVDTPGVLAGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFNRVISSLRGHDDKIRVVLNKADQIDTQQLMRVYGALMWSLGKVLKTPEVMRVYIGSFNDKPVNDAVTGPIGKELFEKEQDDLLSDLKDIPKAACDRRINEFVKRARAAKIHAYIISHLKKEMPAMMGKAKAQQKLIDNLAGEFGKVQREFHLPPGDFPNVEHFREILSGYNIDKFEKLKPKMIQAVDDMLAYDIPNLLKNFRNPYD 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3510 499 Gene3D - 154 382 IPR027417 -
Ssu6g3510 499 Gene3D - 118 490 - -
Ssu6g3510 499 PANTHER CALCIUM-BINDING EF HAND PROTEIN 3 497 - -
Ssu6g3510 499 Pfam Dynamin family 154 313 IPR045063 -
Ssu6g3510 499 PANTHER EH DOMAIN 3 497 - -
Ssu6g3510 499 Gene3D - 1 65 - -
Ssu6g3510 499 CDD EHD 153 397 - -
Ssu6g3510 499 SUPERFAMILY EF-hand 2 53 IPR011992 -
Ssu6g3510 499 Pfam Cytoskeletal-regulatory complex EF hand 2 36 IPR000261 GO:0005515
Ssu6g3510 499 Pfam Domain of unknown function (DUF5600) 389 490 IPR040990 -
Ssu6g3510 499 ProSiteProfiles EH domain profile. 1 49 IPR000261 GO:0005515
Ssu6g3510 499 Pfam N-terminal EH-domain containing protein 117 149 IPR031692 -
Ssu6g3510 499 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 148 384 IPR030381 GO:0005525
Ssu6g3510 499 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Ssu6g3510 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 421 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3510 Ssu-Chr6 78035034 78041242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3510 1 499 EF-hand Containing Proteins AT3G20290 86.427 0.0 881
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3510 K12483 - gmx:100804468 955.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3510 6 78035034 78041242 Ssu6g3510 6 78035034 78041242 ECH