Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3506 ATGCCAAACGAGCTTCTCTCGAACGCCGCCGCGGACCAGTCCTTCACGGACGCGTGGGTGCAAGCCAACATCTCCAGCTACCACCCGGCCACGCAAATCGAAGCCATAGCCGTGGGCAACGAAGTCTTCGTCGACCCAAACAACACCACCAAGTTCCTCGTCCCGGCCATGAAGAACGTCCACGCCTCCCTCGTCAAGCACAACCTCGACACCGCCATTAAGATCTCCTCACCGGTCGCACTCTCCGCGCTCAGCACCTCGTACCCCGCGTCATCCGGTGCGTTCAAAACCGAACTGGTCGAACCGGTTATTAAACCGATGCTGGACTTCCTTCGCCAGACCGGGTCCTATCTTATGGTGAACGCGTACCCCTTCTTCGCTTACACCGCAACCTCCGATAAAATCTCATTGGACTACGCGCTCTTCAAGAACAACCCTGGCGTCGTCGATTCCGGCAACGGCTTGAGATACACGAACCTCTTCGACGCCCAAATCGACGCCGTTTTCGCCGCCATGTCAGCGCTCCAATACGACGACGTTAAGATCGCGGTCTCCGAGACGGGCTGGCCCTCCGCGGGGGACTCGAACGAGATCGGAGCCAGCCCCGCCAATGCGGCGTCGTATAACGGAAACTTGGTGAGGCGCGTGCTGAATGGGAGTGGGACCCCCCTGAGGCCCAGTGACTCCCTCGACGTTTTCCTCTTCGCGCTTTTCAACGAGAACCAGAAATCGGGCCCCACATCGGAGAGGAACTACGGGCTGTTTTATCCCACTGAGCAGAAGGTCTACGATATTCCGCTGACGGCGGCGGAGGTTAATGACTCGTCGGCGCCGGCAGTCCGGCGTCGGGAAGAGTCAGGTTCCGGTGAGCGGAGACGTGTCGACGACGTCGTATCGCGGCCAGACGTGGTGCGTGGCGAATGGTGCTTCTTCCGGGGAGAAGCTGCAGGACGCTCTTAA 960 0.5969 MPNELLSNAAADQSFTDAWVQANISSYHPATQIEAIAVGNEVFVDPNNTTKFLVPAMKNVHASLVKHNLDTAIKISSPVALSALSTSYPASSGAFKTELVEPVIKPMLDFLRQTGSYLMVNAYPFFAYTATSDKISLDYALFKNNPGVVDSGNGLRYTNLFDAQIDAVFAAMSALQYDDVKIAVSETGWPSAGDSNEIGASPANAASYNGNLVRRVLNGSGTPLRPSDSLDVFLFALFNENQKSGPTSERNYGLFYPTEQKVYDIPLTAAEVNDSSAPAVRRREESGSGERRRVDDVVSRPDVVRGEWCFFRGEAAGRS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3506 319 MobiDBLite consensus disorder prediction 277 294 - -
Ssu6g3506 319 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 1 276 IPR044965 GO:0004553|GO:0005975
Ssu6g3506 319 MobiDBLite consensus disorder prediction 274 294 - -
Ssu6g3506 319 Pfam Glycosyl hydrolases family 17 2 265 IPR000490 GO:0004553|GO:0005975
Ssu6g3506 319 Gene3D Glycosidases 1 274 - -
Ssu6g3506 319 SUPERFAMILY (Trans)glycosidases 2 265 IPR017853 -
Ssu6g3506 319 ProSitePatterns Glycosyl hydrolases family 17 signature. 180 193 IPR000490 GO:0004553|GO:0005975
Ssu6g3506 319 PANTHER O-GLYCOSYL HYDROLASES FAMILY 17 PROTEIN 1 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3506 Ssu-Chr6 77986224 77987183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3506 1 314 Glycoside Hydrolase AT5G55180 66.879 2.15e-149 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3506 - - gmx:100803406 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3506 6 77986224 77987183 Ssu6g3506 6 77986224 77987183 ECH