Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3502 ATGAAGAAAGGCAAAGTTCAAAAGAACATACGGTCTTTGACACTATGCCTTGCTTTACTCTCTCTCATCACAATCTTCCCCCACTTTTGTGAGTCCTTCGACTATGGCCAAGCCCTGTCCCAGAGCCTCCTCTACTTCGAGTCACAGCGTTCAGGTCGCTTACCCCACAATCAAAGGGTCACTTGGCGTCACCATTCTGCCCTCACCGATGGCCTAGAACAAGGGGTGGACTTGGTGGGAGGGTACTATGATGCGGGGGACAATGTGAAATTTGGGCTACCAATGGCATTCACCATAACACTCCTCTCGTGGGGTGCCATAGAATACGGCGAACAAATCGCCGCTGCCGGCGAGTATGCTCACGCTCTGGAGGCCATCAAGTGGGGAACGGATTATTTCATCAAAGCCCACACACAACCAAATGTTCTTTGGGTAGAGGTGGGTGACGGCGACACTGATCACTACTGTTGGCAGCGGCCGGAGGACATGACGACGTCACGGCGAGCTTATAAGGTTGACGCGAACAACCCCGGCTCGGATGTCGCCGGCGAGACGGCGGCAGCGTTGGCGGCGGCATCCATTTTGTTTAGGAGAACAAACCCACATTACTCTCAACTACTTTTGCATCATGCACAACAGTTGTTTGAGTTTGGTGACAAGTTCATGGGCAAGTATGATGAGAGTGTTGGAGTGGCTAAAGGGTATTATGCTTCGGTTAGTGGGTACATGGATGAGTTGCTGTGGGCAGCCGTTTGGCTATACAGGGCCACCGAAAAGGAGGAATATTTAAGGTATTTTTTGGAGAAGGCTTATGACTTTGGTGGGACCACTTGGGCCATGACTGAATTCAGCTGGGATGTTAAGTGCGTTGGTGTTCAAGCCATTGCTTCCATGTTTCTTATGGAAGAGAAGAAGCACAAGAAACATGAGGTCATACTCAAACAGTATCGTTCAAAAGCCGAGCACTACCTCTGCGCGTGCCTCAACCTCAACAATGTGAGTAACGTGGAGCGCACCCCAGGAGGGTTACTGTATGTCCGCCAATGGAACAACATGCAATACGTTGCAACGGCGTCGTTTCTTCTCACGGTGTACTCTGATCATCTCCTAGCCACAGATCAGACGCTGCGTTGCCAAAAAGGGGAGGTGGGTCCCCATGAGATGTTTGCCTTTGCAAAGTCACAGGTTAATTACATCTTGGGTTCTAATCCAATGGGTATGAGCTACTTGGTAGGCTATGGTCCCAATTTCCCGCAGAGGGTGCACCATAGGGGTGCATCCATTGAATCATACGGGGAAAACAAGGGTTTTATTGGGTGCACTCAGGGTTACGATAACTGGTACGGACGCCCTGAGCCCAACCCAAATGTGCTCATTGGGGCCCTCGTTGGTGGGCCTGATATCAAGGACCAATTTAACGATGAGAGGCGAAATTACATCCAGACAGAAGCTTGCACCTACAATACGGCAGCACTAGTAGGGGTTTTTGCTAGATTGCATCAATCACAAGGTGATGTTTATTATAATGAAACCCCTTTGATAGCATCTAGCTAA 1554 0.4974 MKKGKVQKNIRSLTLCLALLSLITIFPHFCESFDYGQALSQSLLYFESQRSGRLPHNQRVTWRHHSALTDGLEQGVDLVGGYYDAGDNVKFGLPMAFTITLLSWGAIEYGEQIAAAGEYAHALEAIKWGTDYFIKAHTQPNVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDANNPGSDVAGETAAALAAASILFRRTNPHYSQLLLHHAQQLFEFGDKFMGKYDESVGVAKGYYASVSGYMDELLWAAVWLYRATEKEEYLRYFLEKAYDFGGTTWAMTEFSWDVKCVGVQAIASMFLMEEKKHKKHEVILKQYRSKAEHYLCACLNLNNVSNVERTPGGLLYVRQWNNMQYVATASFLLTVYSDHLLATDQTLRCQKGEVGPHEMFAFAKSQVNYILGSNPMGMSYLVGYGPNFPQRVHHRGASIESYGENKGFIGCTQGYDNWYGRPEPNPNVLIGALVGGPDIKDQFNDERRNYIQTEACTYNTAALVGVFARLHQSQGDVYYNETPLIASS 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3502 517 SUPERFAMILY Six-hairpin glycosidases 32 505 IPR008928 GO:0005975
Ssu6g3502 517 Gene3D - 31 503 IPR012341 GO:0005975
Ssu6g3502 517 PANTHER ENDO-1,4-BETA-GLUCANASE 7 506 - -
Ssu6g3502 517 Pfam Glycosyl hydrolase family 9 35 495 IPR001701 GO:0004553|GO:0005975
Ssu6g3502 517 PANTHER ENDOGLUCANASE 7 506 - -
Ssu6g3502 517 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 398 424 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3502 Ssu-Chr6 77949784 77953044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3502 9 498 Glycoside Hydrolase AT2G32990 72.800 0.0 762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3502 - - gmx:100786912 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3502 6 77949784 77953044 Ssu6g3502 6 77949784 77953044 ECH