Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3481 ATGGAGGACATGGACGAGATCGATGCCGTTCCTCAGGTTTACATGGCTTGCATCCTAAATGGTCATAGAATAGGAGTTTCTTATTATGATTCCACCCTTCGCCAACTTTATGTACTTGAAGTTTGGGATGATGGTGACAAAGGTTTTCCAGTTATTGATTTGGTGAAATATCAAGCAAACCCTTTGGTTATTTACACAAGCACTAAAAGTGAAGAATCCTTCTTGTCTGCTCTGCAACGAAGTGATGGAGTAGCTGAGTCTCCTACGATCAAGCTTGTGAAAAGTTCAATATTCAGCTATGAGCAAGCATGGCATAGATTAATTTACCTGCGGGTGGTGGGGATGAATGATGGATTAAATGTCAAGGAGAGGATTTACTATTTGAGTTCCATGATGGACATGGGTAGTGAAGTACAAGTTCGTGCTAGCGGCGGCCTTCTTGCAATATTAGAGAATGAAAGGATTGTAGATACTCTTGAGCAAAAAGAATCTGGAAATACATCAATTACAATAGATTCAGTAGCAGAAATTTCACTAAATAACTTTCTCAAACTTGATGCGGCAGCTCATGAAGCATTACAAATATTCCAAATAGACAAGCACCCAAGCCACATGGGAATTGGTAGAGCAAAAGAAGGGTTTTCAGTATTTGGAATGATGAATAAGTGTGTGACTCCAATGGGTAGACGTCTTTTGAGAAATTGGTTCTTAAGGCCTATACTTGATCTTGAAGTTCTAAACTACCGTTTAAATTCTATATATTTCTTTCTATGCTCAGAAGAACTCGTTGCTTCTTTACGGGAAACCTTGAAATCTGTGAAGGACATACCCCACTTGCTGAAGAAATTTGACTCTCCAAGCTCTATATGCACTAGCTCTGATTGGACAGCTCTTCTGAagagtatTTGTGCGCTGTTGCATGTAAACAAGATTTTTGAAGTTGGAATTTCCGAAGGTCTTCGAGAAGAATTGAAGTATTTGAACTTGGATATTGTTGAGAAGGCAAGTTCATGCATAACAACAGATCTTGCTTATGTCTATGAGCTGGTAATTGGTGTTATTGATGTAAATAGAACAAAGGAGAAGGGATATGCGACAGTGGTGAAAGAAGGTTTCTGTAATGAGTTGGATGAGCTGAGGCAAATATACGAGGAACTGCCGGAATTTCTGGAAGAGGTTTCATCTTTGGAATTAGCACAACTTCCCGTTCTTTGCAAGGACAAACGCATTCCTTGTATTGTTTATATACAGCAAATAGGTAGATATTTAATGTGTATCTTTgaagaaaaacttaaagaaacCACTCTGGAGAACCTTGTAGATTGGGAATACACATTTTGTGATACAGATGGAGAGACAGAAAGATACTTTTATCGTACGCCAAAGACACGAGAATTGGACAGTCTGCTGGGAGATATCCatcataaaattttagATATGGAGAGGGCGATCACCAGAGACTTGTTTTCACGTGTACTGTTGTTCTCAACCCATTTGATAAAGGTGGCAACTTTTGCAGCTGAACTGGATTGcTTTTTATCAATGGCATTGGTTGCTCGGCAGAACAATTATGTCAGGCCTTTGTTGACTGAAGAAAATTTGCTCGATATAAAAAATGGAAGGCATGTTTTGCAGGAAATGACTGTAGACACATTTATTCCTAATGACACTAAGATTCTTCATGATGGAAGAATTAATATCATCACTGGTCCTAATTTTTCGGGAAAAAGTATCTATATAAAGCAGGTTGctataattgtttttctctcccACATTGGCAGTTTTGTGCCAGCTGATGCCGCAACTGTGGGTCTGACAGATAGAATATTTTGTGCAACGGGAAGCAGGCTTATGACAGCTGAACAATCAACATTTATGATTGATCTACATCAAATAGGGATGATGCTCAGGCATGCTACTTCACGATCCCTGTGTATGGTGGATGAATTTGGTAAAGGCACTCTTACAGAAGACGGCATAGGTCTACTTGCTGGGACCATAAATCACTTTGTCACGAGTGATGAACCTCCAAAGGTTTTCGTGTGCACTCATCTCATGGATTTATTGCATGGGCATTCCTTGACCAAGTCTGAGCAGATTAAGTTCTACACAATGAGTATACTGCGGCCTGACAACAATTCCACACATATTGAAGACATTGTCTTTTTATACAGGCTTGTCCCTGGGCATGCGCATCATAGCTATGGGCTGCACTGTGCTCTGCTTGCTGGTGTACCAGACGAAATCATAAAAAGAGCAGCAGCTGTGTTGAATGCCGTTTCAAAGAACAATCATGTTGAGCGGTTGTGCAATGAGAACATCTCAGCTCAAGATCGTCAATACAAGGATGCCATGGAGAAATTGTTGGAATTCGATATTGACAAAGGCgacttaaaacttttctttgagGATATATTTTCTCTAGTTCTTAATGCATCGTGA 2442 0.3874 MEDMDEIDAVPQVYMACILNGHRIGVSYYDSTLRQLYVLEVWDDGDKGFPVIDLVKYQANPLVIYTSTKSEESFLSALQRSDGVAESPTIKLVKSSIFSYEQAWHRLIYLRVVGMNDGLNVKERIYYLSSMMDMGSEVQVRASGGLLAILENERIVDTLEQKESGNTSITIDSVAEISLNNFLKLDAAAHEALQIFQIDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLEVLNYRLNSIYFFLCSEELVASLRETLKSVKDIPHLLKKFDSPSSICTSSDWTALLKSICALLHVNKIFEVGISEGLREELKYLNLDIVEKASSCITTDLAYVYELVIGVIDVNRTKEKGYATVVKEGFCNELDELRQIYEELPEFLEEVSSLELAQLPVLCKDKRIPCIVYIQQIGRYLMCIFEEKLKETTLENLVDWEYTFCDTDGETERYFYRTPKTRELDSLLGDIHHKILDMERAITRDLFSRVLLFSTHLIKVATFAAELDCFLSMALVARQNNYVRPLLTEENLLDIKNGRHVLQEMTVDTFIPNDTKILHDGRINIITGPNFSGKSIYIKQVAIIVFLSHIGSFVPADAATVGLTDRIFCATGSRLMTAEQSTFMIDLHQIGMMLRHATSRSLCMVDEFGKGTLTEDGIGLLAGTINHFVTSDEPPKVFVCTHLMDLLHGHSLTKSEQIKFYTMSILRPDNNSTHIEDIVFLYRLVPGHAHHSYGLHCALLAGVPDEIIKRAAAVLNAVSKNNHVERLCNENISAQDRQYKDAMEKLLEFDIDKGDLKLFFEDIFSLVLNAS 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3481 813 PIRSF MSH2 1 799 IPR011184 GO:0005524|GO:0006298|GO:0030983
Ssu6g3481 813 Gene3D - 524 796 IPR027417 -
Ssu6g3481 813 SUPERFAMILY DNA repair protein MutS, domain III 186 523 IPR036187 -
Ssu6g3481 813 PANTHER MUTS PROTEIN HOMOLOG 5 21 792 - -
Ssu6g3481 813 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 21 792 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Ssu6g3481 813 Pfam MutS family domain IV 371 474 IPR007861 GO:0005524|GO:0006298|GO:0030983
Ssu6g3481 813 ProSitePatterns DNA mismatch repair proteins mutS family signature. 643 659 IPR000432 GO:0005524|GO:0006298|GO:0030983
Ssu6g3481 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 524 760 IPR027417 -
Ssu6g3481 813 Pfam MutS domain V 567 759 IPR000432 GO:0005524|GO:0006298|GO:0030983
Ssu6g3481 813 SMART DNAend 211 548 IPR007696 GO:0005524|GO:0006298|GO:0030983
Ssu6g3481 813 Pfam MutS domain III 190 516 IPR007696 GO:0005524|GO:0006298|GO:0030983
Ssu6g3481 813 Gene3D - 183 410 - -
Ssu6g3481 813 SMART mutATP5 563 758 IPR000432 GO:0005524|GO:0006298|GO:0030983
Ssu6g3481 813 CDD ABC_MSH5_euk 536 745 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3481 K08741 - gmx:100797567 1533.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3481 6 77685258 77699727 Ssu6g3481 6 77685258 77699727 ECH