Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3479 ATGATGGGTCAGATCGTGCGGAGGAAGAAGAAGGGACGTCCCTCCAAGGCAGATCTGGCTCGCCGCTCCGGCGAGTCTCCGGCGGCCGCGCAGCCAGACCTCCGACGGAGCCGCCGCCGCCGGAATGTGCGCTACAACATCGACTACGACGACTACCTCGACGAGGAGGACGAGGACGAGGAGGAGGACGAGCGGAGGCGCGAGAAGAAGAAGCTCAAGCTCGTCGTGAAGCTCAACAACCacgaggaggaggaggaggaggacgaCGACAACGACAACGCGCCGAGTCGCAGAGGCGCGCGTGGGGCGCACGCGACGGAGGAAAAAGGGGAAGAGGACGAGGACGAAGAGGAGGgcgaagaggaagaggaagaagaggagaatGAGGAGGCGGAGGAGCAGGAAGAAGAGCGTGAGGTAAAGGGCAGAAAAGTGGATTCCAAAGGGCTCCACTCTGTTTCAGtCTTAGGAACTCCATCGAAGCTTCCACCTGGGATCCCGTTGCCTGACAAGAGGACCCTGGAGTTGATCCTTGACAAGCTTCAGAAGAAGGACACATATGGTGTGTATGCGGAGCCGGTTGATCCAGAAGAGCTTCCTGATTATCATGATGTGATTGAGCATCCGATGGACTTTGCCACGGTGAGGAAGAAGTTGGCAAATGGATCTTATCCTACCTTTGAACAATTTGAGAGTGATGTTTTTTTGATTTGCTCAAATGCAATGCAATACAATGCGGCGGAGACTATATACCATAAACAGGCACGATCAATACAAGAACTAGCAAGGAAAAAGTTTGAAAAGTTAAGGATTGACTTTGAACGTTCTCAGAGTGAGCTGAAGCCTGAACAAAAAACAAGATCTAATTCCCTGGTTAAGAAGCTAGCAAAGAAGCCCCTGGGTCACGCTTCTCAGGAACCTGTTGGCTCTGATTTTTCCTCGGGTGCAACTCTTGCTACTATTGGAGATGTACTGCCAACTTCCCATCCAATCCAAGGTGTCGTCTGTGAAAGGCCTGGCAACATTGATGGCCTTTTGGAGGGTAATGCTTTCTTGATTGATGCAAATCAAGAGAAGGCAGAAGACTATATATCAGGGAGGGGTCTGCTCTCCAAGTTGGGAAGGAAATCATCTGTGCAAGATATTGAACGTCGTGCAACTTATAATATGTCTAATCTACCAGTTACTAGATCTGATTCCATATTTACGACATTTGAGAGTGAAATTAAGCAGCTAGTTACTGTTGGACTACAAGCTGAATATTCCTATGCCAGGAGTTTGGCTCGTTTTGCTGCAACTCTAGGACCTACTGCTTGGAGAATTGCTTCCCAGAGGATTCAGCAGGCACTGCCACCTGGCTGTAAATTTGGTCGTGGTTGGGTTGGAGAGTATGAACCGCTTCCAACCCCGGTATTAATGCTTGATAATCGTGTCCAGCAACAACCTAGTTTGGTGACAAAGTTGCAGTCTTCTactgaattaataaaggttgaCAAAAATTGTAAGAATGTGGAATCCACCATGGAACATCCTGTTAATGGACCAATGCTTGAGGGAAAACAGCCTTCAGTTTGTTCTAGTAGTGGGCTTACATCAGGTGGAAAATCATCTTTGTTTGGTTCTGCTGGACCAAGACCCAATTCTCATGTCAATCTCTTTTACCAGCAACCCAATGTTCAAACCAGGAACCTCAACAAGTCTGAGAATAAGGGTTTGAAACAAGTGGAATTGAACTCTTTACCCTCGAGTGATCAGAATAATACCAGTCTAGTTGCAAAGCTTACAAGCAATACTCCTGCAGCAGTGTCCAAGCCCAGAGAAAAGGTACCAAGTAACATGAATAGTTTACCGTCTATGCCTTTCAAACAGCCAGATACTAATGGGGTTGTTAGTGGAGAGTTGCCTAATGGAAAAGTAAGGAATACTAATTTAAATAGACGGATGACTGGTCCATCATCTGAAAGTACATCAAATCAAACAGGCAGGGCAGCTCCCTTCGTTGCACATGGGCAGGAGCAGAATCTTAGTGACCCAGTTCAGTTGATGAGGATGTTAGCTGAAAAGACACAAAAGCAACAGACTTCTAGTTCATCCAATCATTCCCCTGCTGACACCCCACCAGTGACAACATCAGTTCCGTCAGGATGGAGAGAAGACCCGAGCAATGCTTCAGCAGTAGCTGCCCGTGCATGGATGTCTGTAGGGGCAGCGGGTTTTAAACAAGGACCTGAAAATTCTAGTTCACCCAATAATCAGATTTCTGCAGATTCATTGTACAACCCAGCGCGAGAGTTCCATCAGCCTTTTTCACGAATTAGGGGAGAGTTTCCTTCTGGTGGAATGCCTTTCCAGTCTGAGAAGAACAATTTTCCATTTCAGGCACTTGTACCCCAACCTATTCACCCAGTTGGTGTTTCACAGTTTCCAAACCGACCTATGGTTTTCCCTCAAGTAGCAGCTTCTGACCTATCAAGATTTCAAATACCCCCTTGGCGAGTTATTCGTCCTCATAGTCAACCAAGGCAAAAACAGGAAACACTTCCTCCTGACTTGAATATTGGTTTCCAATCTCCTGGGTCACCTGCAAAACAATCATCTGGTGTGCTGGTTGACTCTCAGCAACCAGACCTGGCTTTGCAACTATGA 2646 0.4607 MMGQIVRRKKKGRPSKADLARRSGESPAAAQPDLRRSRRRRNVRYNIDYDDYLDEEDEDEEEDERRREKKKLKLVVKLNNHEEEEEEDDDNDNAPSRRGARGAHATEEKGEEDEDEEEGEEEEEEEENEEAEEQEEEREVKGRKVDSKGLHSVSVLGTPSKLPPGIPLPDKRTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRKKLANGSYPTFEQFESDVFLICSNAMQYNAAETIYHKQARSIQELARKKFEKLRIDFERSQSELKPEQKTRSNSLVKKLAKKPLGHASQEPVGSDFSSGATLATIGDVLPTSHPIQGVVCERPGNIDGLLEGNAFLIDANQEKAEDYISGRGLLSKLGRKSSVQDIERRATYNMSNLPVTRSDSIFTTFESEIKQLVTVGLQAEYSYARSLARFAATLGPTAWRIASQRIQQALPPGCKFGRGWVGEYEPLPTPVLMLDNRVQQQPSLVTKLQSSTELIKVDKNCKNVESTMEHPVNGPMLEGKQPSVCSSSGLTSGGKSSLFGSAGPRPNSHVNLFYQQPNVQTRNLNKSENKGLKQVELNSLPSSDQNNTSLVAKLTSNTPAAVSKPREKVPSNMNSLPSMPFKQPDTNGVVSGELPNGKVRNTNLNRRMTGPSSESTSNQTGRAAPFVAHGQEQNLSDPVQLMRMLAEKTQKQQTSSSSNHSPADTPPVTTSVPSGWREDPSNASAVAARAWMSVGAAGFKQGPENSSSPNNQISADSLYNPAREFHQPFSRIRGEFPSGGMPFQSEKNNFPFQALVPQPIHPVGVSQFPNRPMVFPQVAASDLSRFQIPPWRVIRPHSQPRQKQETLPPDLNIGFQSPGSPAKQSSGVLVDSQQPDLALQL 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3479 881 Coils Coil 53 73 - -
Ssu6g3479 881 MobiDBLite consensus disorder prediction 596 625 - -
Ssu6g3479 881 Gene3D - 103 290 IPR036427 GO:0005515
Ssu6g3479 881 MobiDBLite consensus disorder prediction 834 881 - -
Ssu6g3479 881 PRINTS Bromodomain signature 199 215 IPR001487 GO:0005515
Ssu6g3479 881 PRINTS Bromodomain signature 215 233 IPR001487 GO:0005515
Ssu6g3479 881 PRINTS Bromodomain signature 233 252 IPR001487 GO:0005515
Ssu6g3479 881 MobiDBLite consensus disorder prediction 92 108 - -
Ssu6g3479 881 ProSiteProfiles Bromodomain profile. 182 252 IPR001487 GO:0005515
Ssu6g3479 881 MobiDBLite consensus disorder prediction 840 881 - -
Ssu6g3479 881 SMART bromo_6 163 271 IPR001487 GO:0005515
Ssu6g3479 881 ProSitePatterns Bromodomain signature. 188 244 IPR018359 -
Ssu6g3479 881 Coils Coil 107 144 - -
Ssu6g3479 881 MobiDBLite consensus disorder prediction 687 724 - -
Ssu6g3479 881 Pfam Bromodomain 176 256 IPR001487 GO:0005515
Ssu6g3479 881 SUPERFAMILY Bromodomain 159 269 IPR036427 GO:0005515
Ssu6g3479 881 MobiDBLite consensus disorder prediction 63 81 - -
Ssu6g3479 881 MobiDBLite consensus disorder prediction 687 718 - -
Ssu6g3479 881 MobiDBLite consensus disorder prediction 506 532 - -
Ssu6g3479 881 MobiDBLite consensus disorder prediction 1 16 - -
Ssu6g3479 881 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 2 881 - -
Ssu6g3479 881 CDD Bromodomain 170 266 - -
Ssu6g3479 881 PANTHER BROMODOMAIN CONTAINING PROTEIN 2 881 - -
Ssu6g3479 881 MobiDBLite consensus disorder prediction 596 661 - -
Ssu6g3479 881 MobiDBLite consensus disorder prediction 636 661 - -
Ssu6g3479 881 MobiDBLite consensus disorder prediction 1 167 - -
Ssu6g3479 881 MobiDBLite consensus disorder prediction 109 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3479 Ssu-Chr6 77655796 77660672 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3479 K22184 - gmx:100799986 1058.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3479 6 77655796 77660672 Ssu6g3479 6 77655796 77660672 ECH
Ssu9g0951 9 39377951 39378739 Ssu6g3479 6 77655796 77660672 PCT