Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3449 ATGTTATTTGGTTGTGTTCTATGCAACGTGGCTTCTGTTGGTGTTGAAGTGTTCACAGATTTTGGCATGGAGAATACTGGAGGCGGTACCCTTTTGAGGAATAGAAGGTTTGAGAGCTTCTTGAGTGCAAGCCGTGGCCAAAGTGGGGAAGAAACTCCGAGAGTTTTAGTGAAAGATGAAGTGGGAGAAAGGCCAAGGAATGATGtctatgaagatgatgatgggTTGGCTTCAGCAATCATATCTTGGATCAGAATTGTTACATGTTTTGTGTCTATGATGGTCACAACATTCATATGGGCATTGATCATGGTTGTACTTATACCATGGCCCTATGAGAGGATTAGACAAGGCAACATTTATGGACACGTGACTGGTAGAATGCTGATGTGGATTCTTGGTAATCCTATAAAGATCGAAGGTGCTGAGTACTCTAACGAGAGGGCCATTTACATCAGTAATCATGCATCTCCAATAGACATATTTCTTATAATGTGGTTGACTCCAACAGGCACTGTTGGCATTGCTAAGAAGGAGATAATATGGTATCCTTTATTTGGGCAACTTTATGTTTTGGCCAACCATCTTCGTATAGATCGATCCAACCCAACTGCTGCTATCGAGTCCATGAAAGAGGCAGCTCGTGCAGTTGTGAAAAACAATCTGTCCCTGATCATTTTTCCTGAGGGTACGAGGTCTAAAAATGGACGACTACTTCctttcaaaaaaGGTTTTGTTCATTTAGCACTGCAATCGCGCCTTCCAATCGTTCCAATGGTCCTGACTGGTACTCATCTAGCATGGAGGAAAGGCAGTTTGCATGTTCGACCGGCGCCTCTCACTGTCAAGTATCTTCCTCCTATAAGTACTGAAAATTGGAAGGCTGACAAGATTGATGACTATGTCAAAATGGTGCACAACCTGTATCGTGAACACCTTCCAGAGAGTCAGAGGCCTCTGCCTTGA 966 0.4224 MLFGCVLCNVASVGVEVFTDFGMENTGGGTLLRNRRFESFLSASRGQSGEETPRVLVKDEVGERPRNDVYEDDDGLASAIISWIRIVTCFVSMMVTTFIWALIMVVLIPWPYERIRQGNIYGHVTGRMLMWILGNPIKIEGAEYSNERAIYISNHASPIDIFLIMWLTPTGTVGIAKKEIIWYPLFGQLYVLANHLRIDRSNPTAAIESMKEAARAVVKNNLSLIIFPEGTRSKNGRLLPFKKGFVHLALQSRLPIVPMVLTGTHLAWRKGSLHVRPAPLTVKYLPPISTENWKADKIDDYVKMVHNLYREHLPESQRPLP 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3449 321 SMART plsc_2 149 264 IPR002123 GO:0016746
Ssu6g3449 321 Coils Coil 320 321 - -
Ssu6g3449 321 TIGRFAM AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 146 261 IPR004552 GO:0003841|GO:0008654|GO:0016020
Ssu6g3449 321 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 80 314 - -
Ssu6g3449 321 CDD LPLAT_AGPAT-like 127 299 - -
Ssu6g3449 321 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE ALPHA 76 317 - -
Ssu6g3449 321 Pfam Acyltransferase 137 261 IPR002123 GO:0016746
Ssu6g3449 321 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 76 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3449 Ssu-Chr6 77243011 77245111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3449 86 264 Acyl Lipid Metabolism Gene Families AT4G30580 31.746 4.63e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3449 K13509 - pvu:PHAVU_006G042300g 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3449 6 77243011 77245111 Ssu6g3449 6 77243011 77245111 ECH