Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3103 ATGGAGGCAATTCAATTGTGGGTTTCAAAGCACAAGCTAGCGACAGTAGGGGGACTGTGGGCCTCTGGAATTGGGGCATCACTTGTGGCTTATTCACGTACAAGGTCTCCAATGAAGCCTAGTCTTAGGCTTATACATGCTAGATTGCATGCCCAAGCGTTAACACTAGCAGTGTTGTCTGGTGCCGCGGCTTATCGCTACTACGAGAATCGTGCTGGTGAGCCAAAAACACAGGTGGAGAGTCCTGCTCCAAGTGTGGCCCAGCATGTTCAATGGGAGCTCCTCAGTCCTttctga 297 0.5017 MEAIQLWVSKHKLATVGGLWASGIGASLVAYSRTRSPMKPSLRLIHARLHAQALTLAVLSGAAAYRYYENRAGEPKTQVESPAPSVAQHVQWELLSPF 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3103 98 ProSiteProfiles HIG1 domain profile. 1 77 IPR007667 -
Ssu6g3103 98 Pfam Hypoxia induced protein conserved region 11 61 IPR007667 -
Ssu6g3103 98 PANTHER RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL 4 78 IPR040153 -
Ssu6g3103 98 Gene3D - 14 72 - -
Ssu6g3103 98 PANTHER RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL 4 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3103 Ssu-Chr6 70589930 70590422 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3103 - - lja:Lj2g3v2843610.1 147.902
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3103 6 70589930 70590422 Ssu6g3103 6 70589930 70590422 ECH
Ssu9g1658 9 53460247 53460948 Ssu6g3103 6 70589930 70590422 PCT