Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3034 ATGGACGGAGACCCCTCCAACCGCTCATCCACCACCACCGAAGACGACGGTGTGGATGGCGACCCTGCGGTGTGGGCAGCGCTCAACGAAAGCTTCCGTCAGGTGCAGTCGGTGTTGGACCGTAACCGCATCCTCATTGAGGAGGTGAACGAGAACCAGCACTCGAGGCTGCGCGACAGCATGGTCAAGAACGTGTCTCTGATTCAGGAACTCAACGGCAACATCTCCAAGGTTGTCTCTCTCTACTCCGATCTCAATTCCAATTTCTCCACCGCCTTCCAACAACACTCCAAGAACCCCGCCACTAACGTCGCACGTGACAGATCGTGA 330 0.5667 MDGDPSNRSSTTTEDDGVDGDPAVWAALNESFRQVQSVLDRNRILIEEVNENQHSRLRDSMVKNVSLIQELNGNISKVVSLYSDLNSNFSTAFQQHSKNPATNVARDRS 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3034 109 MobiDBLite consensus disorder prediction 1 22 - -
Ssu6g3034 109 PANTHER PROTEIN ELF4-LIKE 4 11 103 IPR040462 GO:0042753
Ssu6g3034 109 Pfam Early Flowering 4 domain 20 98 IPR009741 -
Ssu6g3034 109 PANTHER PROTEIN EARLY FLOWERING 4 11 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3034 Ssu-Chr6 69449855 69450184 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3034 - - ccaj:109790811 145.976
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3034 6 69449855 69450184 Ssu6g3034 6 69449855 69450184 ECH
Ssu9g1590 9 52235613 52236038 Ssu6g3034 6 69449855 69450184 PCT