Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2970 ATGGCGTACAAAGTGGACCATGAATACGACTACCTCTTCAAGGTCGTATTGATCGGAGACTCGGGGGTTGGAAAATCTAACATCCTTTCCAGATTTACGCGAAACGAGTTCTGCTTGGAATCTAAGTCTACCATTGGGGTTGAATTCGCAACCAGAACATTGCAGGTGGAGGGGAAGACTGTAAAGGCACAAATATGGGACACTGCGGGCCAAGAGAGGTACAGAGCTATCACTAGTGCCTACTATAGAGGAGCTGTTGGTGCCTTGTTGGTTTATGACATAACCAAGAGGCAAACATTTGACAATGTGCAGAGGTGGCTTCGTGAACTAAGGGACCATGCAGACTCCAACATTGTTATCATGATGACTGGAAACAAATCTGACCTGAATCATCTGAGAGCAGTCTCTACTGAAGATGCTCAAAGTTTGGCTGAGAAGGAAGGTCTGTCCTTTCTAGAGACTTCAGCATTGGAGGCATACAATGTTGAGAAGGCATTCCAAAccattttgtttgatatatatcACATTATAAGTAAAAAGGCACTGGCAGCACAAGAGGCTACTTCCTCTACTGGCCTTCCCCAAGGAACTACCATAAATGTCTCAAACATGTCAGGTAATGAGGGCAACAGAAGTTGCTTGCTCTAA 648 0.4383 MAYKVDHEYDYLFKVVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMTGNKSDLNHLRAVSTEDAQSLAEKEGLSFLETSALEAYNVEKAFQTILFDIYHIISKKALAAQEATSSTGLPQGTTINVSNMSGNEGNRSCLL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2970 215 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Ssu6g2970 215 PANTHER - 1 214 - -
Ssu6g2970 215 SMART arf_sub_2 1 185 - -
Ssu6g2970 215 SMART rho_sub_3 15 172 IPR001806 GO:0003924|GO:0005525
Ssu6g2970 215 Gene3D - 5 213 IPR027417 -
Ssu6g2970 215 MobiDBLite consensus disorder prediction 191 215 - -
Ssu6g2970 215 ProSiteProfiles small GTPase Rab1 family profile. 8 213 - -
Ssu6g2970 215 ProSiteProfiles small GTPase Ras family profile. 1 215 IPR001806 GO:0003924|GO:0005525
Ssu6g2970 215 PRINTS Transforming protein P21 ras signature 116 129 - -
Ssu6g2970 215 PRINTS Transforming protein P21 ras signature 13 34 - -
Ssu6g2970 215 PRINTS Transforming protein P21 ras signature 54 76 - -
Ssu6g2970 215 PRINTS Transforming protein P21 ras signature 36 52 - -
Ssu6g2970 215 PRINTS Transforming protein P21 ras signature 151 173 - -
Ssu6g2970 215 Pfam Ras family 14 173 IPR001806 GO:0003924|GO:0005525
Ssu6g2970 215 SMART ras_sub_4 10 176 - -
Ssu6g2970 215 CDD Rab11_like 10 174 - -
Ssu6g2970 215 PANTHER RAS-RELATED PROTEIN RAB11C-LIKE 1 214 - -
Ssu6g2970 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 178 IPR027417 -
Ssu6g2970 215 TIGRFAM small_GTP: small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Ssu6g2970 215 SMART rab_sub_5 13 176 - -
Ssu6g2970 215 SMART ran_sub_2 18 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2970 Ssu-Chr6 68117523 68119385 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2970 K07904 - gmx:100799595 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2970 6 68117523 68119385 Ssu6g2970 6 68117523 68119385 ECH
Ssu9g1532 9 51254210 51255807 Ssu6g2970 6 68117523 68119385 PCT