Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2961 ATGGCGGGCGCGGATCCTTCTCGAAGCTTCATGAAAGACGTGAAGCGCGTGATCATCAAGGTCGGCACCGCGGTGGTGACTCGGGAAGAAGGAAGGTTAGCGGTTGGAAGAATAGGGGCTCTGTGCGAGCAGATTAAACAACTCAACTCTCTCGGATACGACATTATTCTGGTCTCGTCCGGTGCCGTCGGTATTGGCCGCCAGAGACTCCGTTACCGCAAATTAATCCACAGCAGCTTCGCCGACCTTCAGAAACCCCAACTCGATCTCGATGGCAAGGCTTGTGCTGCCGTTGGACAGAATAGTCTTATGGCTCTCTACGATACTCTGTTCACTCAGCTGGACGTGACATCTGCTCAGCTTCTTGTGACGGACAACGATTTTCGAGATAAGGATTTCAGGAAGCAACTTACGGAAACCGTGAAATCGTTGTTAGCGCTCAAGGTTATTCCGGTGTTCAATGAGAACGATGCTGTCAGTACTAGGAAGGCTCCATATGAGGATTCTTCTGGTATATTTTGGGATAACGATAGTTTATCTGCTTTGTTGGCCTTGGAGTTAAAAGCcgatcttcttattttgttgagTGATGTAGAAGGTCTTTATAGTGGCCCTCCGAGTGACCCACACTCAAAGCTTATTCATACATATATTAAGGAGAAGCATCAGAGTGAAATTACTTTTGGCGACAAGTCTAGAGTGGGAAGAGGTGGAATGACTGCCAAAGTAAAAGCTGCTGTTCATGCAGCTGAAGCTGGTATTCCTGTTGTTATTACCAGTGGTTTTGCAGctgaaaatatcattaatgttcTCCAAGGACAACGTATAGGAACTCTCTTCCATAAAGATGCACGTGAGTGGGTCCAAGTAAAAGAGGTTGATGCACGTGAGATGGCAGTTGCAGCCAGGGAATGTTCCAGAAGGCTCCAGGCCATATCTTCAGAAGAAAGGaaacaaattttacttaaaatagcTGATGCCCTGGaagcaaatgaaaaaataatcagGACTGAAAATGAAGCTGATGTTGCTACGGCACAAGAAGCTGGATATGAAAAATCCTTGGTGGCTAGGCTAGGTTTAAAACCTGGGAAGATTGCAAGCCTTGCAAACAACATGCGAATTATCGCCAACACGGAAGATCCAATTGGTCGAGTATTAAAACGAACCGAGCTTTCAGATGGGCTAATTTTAGAAAAGACATCATCTCCTTTGGGAGTGCTCCTTATTGTTTTTGAGTCACGACCTGATGCTCTTGTACAGATAGCTTCGCTGGCAATCCGAAGTGGGAATGGGCTTCTCTTGAAAGGTGGCAAAGAAGCTAAGCGGTCAAATGCAATTTTGCACAAAGTAATTACTGAGGCCATACCAGATACTGTTGGTGGAAAACTTATAGGACTTGTGACCTCAAGAGAAGAAATCCCTGAGCTACTTAAGCTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAGATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCATGCTGATGGAATTTGCCATGTCTATGTTGATAAGTCTGCTAATTTGGAGATGGCGAGGCGGATTGTACTGGATGCAAAAATAGATTATCCAGCAGTCTGCAATGCCATGGAAACACTTCTTATCCACAAGGATTTGATAGAGAAAGGTTGGCTCAATGATATCGTTGTTGACCTACGAACTGAATGCGTTATATTATATGGAGGACCAAGGGCAAGTTCTCTGTTAAATATTCCACAAGCACATTCGTTTCATCATGAGTACAATTCGCTGGCTTGCACTGTTGAAATTGTGGATGATGTGTATGCAGCTATTGATCATATAAATCTTTATGGAAGGCATGCCACTGTTCTCTTCTTGATAGGAAACaaTGCACATACTGATTCCATCATTGCAGAAGATAATGAAGTAGCTAATATGTTTCTACGCCAAGTAGACAgTGCTGCCGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCACGATTTGGACTGGGCGCAGAGGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAGGGATTGTTAACAACTAGATGGATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAGAACGATTGTGTACACCCACAGAGACCttgcaatttaa 2181 0.4282 MAGADPSRSFMKDVKRVIIKVGTAVVTREEGRLAVGRIGALCEQIKQLNSLGYDIILVSSGAVGIGRQRLRYRKLIHSSFADLQKPQLDLDGKACAAVGQNSLMALYDTLFTQLDVTSAQLLVTDNDFRDKDFRKQLTETVKSLLALKVIPVFNENDAVSTRKAPYEDSSGIFWDNDSLSALLALELKADLLILLSDVEGLYSGPPSDPHSKLIHTYIKEKHQSEITFGDKSRVGRGGMTAKVKAAVHAAEAGIPVVITSGFAAENIINVLQGQRIGTLFHKDAREWVQVKEVDAREMAVAARECSRRLQAISSEERKQILLKIADALEANEKIIRTENEADVATAQEAGYEKSLVARLGLKPGKIASLANNMRIIANTEDPIGRVLKRTELSDGLILEKTSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHKVITEAIPDTVGGKLIGLVTSREEIPELLKLDDVIDLVIPRGSNKLVSQIKSSTKIPVLGHADGICHVYVDKSANLEMARRIVLDAKIDYPAVCNAMETLLIHKDLIEKGWLNDIVVDLRTECVILYGGPRASSLLNIPQAHSFHHEYNSLACTVEIVDDVYAAIDHINLYGRHATVLFLIGNNAHTDSIIAEDNEVANMFLRQVDSAAVFHNASTRFSDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKGSGQVVDGDRTIVYTHRDLAI 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2961 726 PIRSF P5C_synthetase 1 726 IPR005766 GO:0003824|GO:0006561
Ssu6g2961 726 Coils Coil 327 347 - -
Ssu6g2961 726 Hamap Glutamate 5-kinase [proB]. 15 284 IPR005715 GO:0005737|GO:0006561
Ssu6g2961 726 TIGRFAM proA: glutamate-5-semialdehyde dehydrogenase 302 700 IPR000965 GO:0004350|GO:0006561
Ssu6g2961 726 PRINTS Glutamate 5-kinase family signature 136 157 IPR001057 GO:0005524|GO:0016301
Ssu6g2961 726 PRINTS Glutamate 5-kinase family signature 234 254 IPR001057 GO:0005524|GO:0016301
Ssu6g2961 726 PRINTS Glutamate 5-kinase family signature 52 66 IPR001057 GO:0005524|GO:0016301
Ssu6g2961 726 PRINTS Glutamate 5-kinase family signature 175 202 IPR001057 GO:0005524|GO:0016301
Ssu6g2961 726 PRINTS Glutamate 5-kinase family signature 96 124 IPR001057 GO:0005524|GO:0016301
Ssu6g2961 726 TIGRFAM P5CS: delta l-pyrroline-5-carboxylate synthetase 8 726 IPR005766 GO:0003824|GO:0006561
Ssu6g2961 726 ProSitePatterns Glutamate 5-kinase signature. 232 249 IPR019797 GO:0004349|GO:0006561
Ssu6g2961 726 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 303 709 IPR016162 GO:0016491
Ssu6g2961 726 PANTHER GLUTAMATE SEMIALDEHYDE DEHYDROGENASE 3 725 - -
Ssu6g2961 726 TIGRFAM proB: glutamate 5-kinase 15 288 IPR005715 GO:0005737|GO:0006561
Ssu6g2961 726 PANTHER DELTA-1-PYRROLINE-5-CARBOXYLATE SYNTHASE 3 725 - -
Ssu6g2961 726 CDD ALDH_F18-19_ProA-GPR 296 707 IPR000965 GO:0004350|GO:0006561
Ssu6g2961 726 Gene3D - 4 288 IPR036393 -
Ssu6g2961 726 SUPERFAMILY Carbamate kinase-like 15 280 IPR036393 -
Ssu6g2961 726 Pfam Amino acid kinase family 15 260 IPR001048 -
Ssu6g2961 726 Hamap Gamma-glutamyl phosphate reductase [proA]. 294 711 IPR000965 GO:0004350|GO:0006561
Ssu6g2961 726 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 512 669 IPR016163 GO:0016620
Ssu6g2961 726 SUPERFAMILY ALDH-like 294 710 IPR016161 GO:0016491
Ssu6g2961 726 Pfam Aldehyde dehydrogenase family 290 558 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2961 Ssu-Chr6 68016054 68024854 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2961 K12657 - gmx:100809989 1275.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2961 6 68016054 68024854 Ssu6g2961 6 68016054 68024854 ECH
Ssu9g1527 9 51106028 51111841 Ssu6g2961 6 68016054 68024854 PCT