Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2808 ATGGAACAGCTGAAGCCGAGCGCTGCTAACTCTTCCCCTCTCACCCCACTGGGCTTCTTGGACCGAGCAGCCACCGTCTACGGCGACGCCCCTTCCGTCGTCTACAACGACACCACGTTCACGTGGTCCCAGACGCGCCGCCGATGCCTCCAGCTGGCCTCCGCACTCTCCTCCCTCGGCGTCGGCCGCGGCCACGTGGTCTCCGTCGTGGCCCCCAACATCCCCGCCATGTACGAGCTCCACTTCGCCGTCCCCTTCGCCGGCGCCGTCCTCAACAACATCAACACGCGCCTCGACGCCCGCACCGTCTCCGTCATCCTCCGCCACGCGAGCTCCACGCTCGTCTTCGTCGACTGCGCCTCACGCGATCTCGTCCTCGAAGCGCTGTCCCTCTTCCCCAATCGCAGTCAGCGCCCAGTCCTGATCCTCATCGCGGACGACACAGTCGAGGAAGCCTCGCCCACCGTTGATTTTTTGGACACGTACGAGGGGCTCGTGGGCAAGGGCGATCCGGGCTTCAAGTGGGCCCAGCCCAACAGCGAGTGGGACCCGATGATACTCAATTACACCTCCGGAACGACGTCGTCCCCCAAGGGCGTGGTCCACTGCCACAGAGGAGCCTTCATCATCACAGTCGATGCTCTCGTCGACTGGGCGGTTCCGAAGAATCCGATTTATCTCTGGACGCTTCCGATGTTCCACGCTAACGGGTGGAGCTTCCCGTGGGGGATGGCCGCCGTGGGCGGAACCAACATCTGCGTCCGCAAGTTCGACGCGGAGACGGTTTACTCTCTGATAAAGCGTCATCACGTGACTCACATGTGCGGTGCTCCCGTGGTTCTCAACATGTTAACGAACTCCCCCGACAACAGACCGCTGGACAAACCGGTTCAGATTCTCACCGCCGGAGCGCCGCCGCCTGCGGCGGTGCTCTTCCGGACGGAGGCGCTCGGCTTTGTGGTGAGCCACGGGTATGGTTTGACGGAAACGGGTGGGTTGGCGGTGTCGTGCGCGTGGAAGGAGAAGTGGAACCGGCTGCCGGCGACGGAGAGGGCGCGGCTGAAGGCGCGGCAGGGGGTGAGGACGGCGGGGATGGCGGAGGTGGACGTGGTGGGTCCCGCCGGGGAGAGCGTGAAGCGGGACGGGGTTAGCATCGGGGAGATTGTGATGAGAGGAGGGTGTGTCATGTTGGGGTACCTTAAGGACCCCGAAGGAACCGCGAGTTGTTTCAAGAACGGGTGGTTCTACACGGGGGACGTTGGGGTGGTGCACGAGGATGGGTACGTAGAAATTAAGGATAGGTCGAAGGATGTTATTATTAGTGGGGGCGAGAATTTGAGTAGCGTTGAGGTGGAGTCGGTGTTGTACGGGCACCCGGCGGTGAACGAGGCGGCGGTGGTGGCCAGACCGCATGAGCCAGTCAGCATGCTTATTGCCCTCACGGAAAGTGGGAGTAGTTCTGGTCACCCATTCTTTCTGCATTAG 1485 0.6249 MEQLKPSAANSSPLTPLGFLDRAATVYGDAPSVVYNDTTFTWSQTRRRCLQLASALSSLGVGRGHVVSVVAPNIPAMYELHFAVPFAGAVLNNINTRLDARTVSVILRHASSTLVFVDCASRDLVLEALSLFPNRSQRPVLILIADDTVEEASPTVDFLDTYEGLVGKGDPGFKWAQPNSEWDPMILNYTSGTTSSPKGVVHCHRGAFIITVDALVDWAVPKNPIYLWTLPMFHANGWSFPWGMAAVGGTNICVRKFDAETVYSLIKRHHVTHMCGAPVVLNMLTNSPDNRPLDKPVQILTAGAPPPAAVLFRTEALGFVVSHGYGLTETGGLAVSCAWKEKWNRLPATERARLKARQGVRTAGMAEVDVVGPAGESVKRDGVSIGEIVMRGGCVMLGYLKDPEGTASCFKNGWFYTGDVGVVHEDGYVEIKDRSKDVIISGGENLSSVEVESVLYGHPAVNEAAVVARPHEPVSMLIALTESGSSSGHPFFLH 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2808 494 PANTHER LONG-CHAIN ACYL-COA SYNTHETASE 2 472 - -
Ssu6g2808 494 PANTHER ACYL-ACTIVATING ENZYME 2 472 - -
Ssu6g2808 494 Gene3D - 436 483 IPR045851 -
Ssu6g2808 494 Pfam AMP-binding enzyme C-terminal domain 450 479 IPR025110 -
Ssu6g2808 494 SUPERFAMILY Acetyl-CoA synthetase-like 11 473 - -
Ssu6g2808 494 Pfam AMP-binding enzyme 21 441 IPR000873 -
Ssu6g2808 494 Gene3D - 2 435 IPR042099 -
Ssu6g2808 494 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2808 Ssu-Chr6 65167429 65170991 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2808 1 472 EF-hand Containing Proteins AT1G21540 64.375 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2808 - - gmx:100779857 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2808 6 65167429 65170991 Ssu6g2808 6 65167429 65170991 ECH