Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2807 ATGGACCACCTAACCAAAAACCCTGCAAACTCACCACCCCTCACTCCACTCACCTTCTTGGAAAGAGCAGCCATCGTCTACGGCGACTCCCACTCCATCCTCTTCGACCGCACTTCCTTCACCTGGTCCCAAACCCACCGTCGATGCCTCCAACTCGCTTCCTCCCTCTCTTCCCTCGGCTTAGGACGGGGCCAAGTCATTTCTGTTCTCTCCCCCAACACTCCTCCAATGTACGAGCTCCACTTCGCCATCCCCATGTGCGGCGCCATTCTCAACAACCTCAACCTCCGCCTCGACCACCACACCCTTTCCGTGCTCCTGCGCCACAGCGAATCAAAGCTCGTCTTCGTCCACTCGCACTCCCTCCCTCTCATCCTCCGCGCCCTGGCCTCCTTCCCTTCAACCGCCCCGCGCCCTTCCCTCGTCCTTATCACCGACGATGCGGTCGCACTCTCCCCAACCCCACCCGTCATCGACACCTACGAGGGCCTTATAAAAAAAGGCGACCCGGGCTTCCGCTGGGCCCGGCCCAACTCCGAGTGGGACCCAATAACCATTAACTACACCTCCGGTACGACGTCGTCCCCCAAAGGCGTGGTACACTCCCACCGCTCAACATTCATAATAGCCCTCGATTCCCTCATCGATTGGTCCGTCCCCAAACAACCCGTTTACTTATGGACCCTACCGATGTTCCACTCCAACGGGTGGACCTTCCCGTGGGGAATTGCCGCCGTAGGCGGCACCAACGTCTGCACGCGTAAAATCAACGCGCCTATTATCTACCGTTTGATCGAATCCCACAACGTAACACACATGTGCGCCGCGCCGGTGGTTCTCAACATGCTGATAACTTACAACCGGACCGAACCGGTGAAGAATCCGGTTCATGTTCTCACCGGAGGATCGTCTCCTCCGGCGACGATCCTCACGCGGGCGGAGGAGTTAGGGTTTAAGGTGAGCCACGGGTACGGGATGACGGAGACATTAGGGGTGATTGTGTCGTGCGCGTGGAAGAGGGAGTGGGACAAGTTTCCGGCGACGGAGCGGGCGCGGTTGCGGGCGCGGCAGGGGGTGAGGACTGCGGCGACGATGGAGGTGGACGTGGTGGATCCGGCAACCGGCGTTAGCGTGAAGCGCGACGGGGTAACCTCCGGCGAAATAGTGGTGCGAGGCGCGTGCGTGATGTTGGGTTACTTGAAAGATGTAGAAGGAACGAAAAGGTGTGTAAGAAACAACGGGTGGTTGTACACGGGGGACGTTGGGGTTATGCATGGGGATGGGTATTTGGAGATAAAGGATAGGTCGAAGGACGTGATAATAAGTGGGGGCGAGAATTTGAGCAGCGTGGAGGTTGAGGCGGTGCTGTATAGGCACCCGGCGGTGAACGAGGTGGCGGTGGTGGCGCGGCCGGACCAGTTCTGGGGGGAGTCACCGTGCGCGTTTGTGAGGCTGAAGGAGGGGTTGGCGGCGCCGCCGTCGGAGAAGGAGGTGGTGGAGTTTTGCAGAGAGAGGCTGCCGCACTTCATGGTGCCCAAGACGGTGGTGTTTAAGGAGGCGCTGCCGAAGACGTCGACGGGGAAGATTCAGAAGCACGTGCTGAGGATGGACGCGCAGGCTATGGGGTCCTTGGTGGCACCACCGGCAAGTCGCATGTAG 1659 0.5961 MDHLTKNPANSPPLTPLTFLERAAIVYGDSHSILFDRTSFTWSQTHRRCLQLASSLSSLGLGRGQVISVLSPNTPPMYELHFAIPMCGAILNNLNLRLDHHTLSVLLRHSESKLVFVHSHSLPLILRALASFPSTAPRPSLVLITDDAVALSPTPPVIDTYEGLIKKGDPGFRWARPNSEWDPITINYTSGTTSSPKGVVHSHRSTFIIALDSLIDWSVPKQPVYLWTLPMFHSNGWTFPWGIAAVGGTNVCTRKINAPIIYRLIESHNVTHMCAAPVVLNMLITYNRTEPVKNPVHVLTGGSSPPATILTRAEELGFKVSHGYGMTETLGVIVSCAWKREWDKFPATERARLRARQGVRTAATMEVDVVDPATGVSVKRDGVTSGEIVVRGACVMLGYLKDVEGTKRCVRNNGWLYTGDVGVMHGDGYLEIKDRSKDVIISGGENLSSVEVEAVLYRHPAVNEVAVVARPDQFWGESPCAFVRLKEGLAAPPSEKEVVEFCRERLPHFMVPKTVVFKEALPKTSTGKIQKHVLRMDAQAMGSLVAPPASRM 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2807 552 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Ssu6g2807 552 Pfam AMP-binding enzyme 22 442 IPR000873 -
Ssu6g2807 552 SUPERFAMILY Acetyl-CoA synthetase-like 9 536 - -
Ssu6g2807 552 Gene3D - 438 541 IPR045851 -
Ssu6g2807 552 PANTHER LONG-CHAIN ACYL-COA SYNTHETASE 2 544 - -
Ssu6g2807 552 CDD ttLC_FACS_AEE21_like 12 535 - -
Ssu6g2807 552 Gene3D - 3 437 IPR042099 -
Ssu6g2807 552 PANTHER ACYL-ACTIVATING ENZYME 2 544 - -
Ssu6g2807 552 Pfam AMP-binding enzyme C-terminal domain 451 528 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2807 Ssu-Chr6 65149297 65150955 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2807 1 541 EF-hand Containing Proteins AT1G21540 60.940 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2807 - - gmx:100789991 981.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2807 6 65149297 65150955 Ssu6g2807 6 65149297 65150955 ECH