Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2806 atGGTGTGGGGACTCTTCCCCGTTGATCCTCTTTCAGGTGAAGATAAGTACTACATTTTCAAAACTGGGATTTACAAAGTTGGTCGAAAAGGTTGTGATGTGATAATCACTAAAGATAAAGGGGTTTCTCGGGTTCATGCAGAAATAGTTGTTAATACAATGAACCTGGTAAATCCTTTACCAAATGAACGTTCTCATTTGTCACCCAGTTTACGTATTAGAGATTGCTCCAAGTATGGGACATTTATTAGCAAGAATGTTGGGCCCAAGAAAAAAGTTCGTGAGCTACCAAACAAAGAAACAGCATTAGAGGATGGTGACCTTGTTTCTTTTGGCACTGGTACTGCTACCTACAAGTTTTGCCATGTTCCCCTCGTTTTTTTCATCTGTTCCTCAAATAAAGTGGATCAATCTCTTGAAGAGAAATTTTCATCAATTGGTGCTAGTATTACTCATACCTTAGGTGAAGAGTGCACACATGTGCTGGTAGATCAACTCATGCCATTGCAGAAGGATCTTGTTGATGCTGTTGTGGCCAAAAAATCTTGTGTTCTCAAAACTTGGCTTGAGTTTTTTGCAGAAAAGAACATTAGCACCGAAATTCCTAGTTGTCATTTATATATTCCAACAGTGTCAGCAGAAGGAGAATCTATTAAAATTGCTGACCCCATAACACGTGAAGACTGCTTGAAAGGATACACTTTTTTGTTGGAATCTGAGCATTTGTATAAATTTGGGGATCAGCTAAAATCTTTATTGGAAGTGGCTGGTGCAAAAGTTGTTTCTTTTGAAGATTTTTGTTCAAATAGCCAAGGTTCATATTATGGAGAGGATAATCGTGTGGTTTGTGTCATCCCAGGAGGACCAGCATGCAAGTCTAATTTCTTCAATAAACAAAGTTCCTTGCTTACAGTGAATGAGATGGACATAATATGTGCTGCTTTCAGTGGACAGTTAGATCTGTCTATTTTGAAATCACCATGCATACTTGTTTCATCATCATGCTCTACAGATGAGACGGTTGTAGCAGATTCAGAAACTGAAGTTGAAACAGCCACATCAGCCCACTCAAATGAGGCATTCAGCAGCGgcaataatgtaaaatatgaaaaaacagAAGAATTATATGATGATTCTGACACTTTGGATAAGAGAAAACATGAGAGAATAGAGGCATCCTCAGAATATGTTTCAACCAGATTGCATGACATTAAACGTGCAAAAACAGAAACATCCTTGGATGGTGCTTCTGTCAGATCACATGCTACCGGCTTCAGGAATGATAATGATGGTATCAAAGTAAAGAAAGGCAAGGTTGATGATTATGAAAGCGGAAATTCAGATATTGTTTACAGCCAATATTTAGTTGTTCGAGATACAAACATATGTCCTAGCATAAGTACTGCACCAAACAGCAATGTTCCAAATTTTAAACGCTTCAGAAAGGCACAAACTCAATCTGGTAATAGCTTTGACAATCTTGTTCCATTTGCAAAATATCCACACAAGGATTCTGACTACGGTAATGATGAGATGTCTGAGTTAGTGAAGGAGGAGAAAAGGCGAAAGAAAATGGAAGCTTTGGCAGATGACCTATTTAATAATGAGAAGGCAAGAAAACGAGGCACCGTTGGTTCTCTTCATGGCATTCTTACTTCATGA 1662 0.3791 MVWGLFPVDPLSGEDKYYIFKTGIYKVGRKGCDVIITKDKGVSRVHAEIVVNTMNLVNPLPNERSHLSPSLRIRDCSKYGTFISKNVGPKKKVRELPNKETALEDGDLVSFGTGTATYKFCHVPLVFFICSSNKVDQSLEEKFSSIGASITHTLGEECTHVLVDQLMPLQKDLVDAVVAKKSCVLKTWLEFFAEKNISTEIPSCHLYIPTVSAEGESIKIADPITREDCLKGYTFLLESEHLYKFGDQLKSLLEVAGAKVVSFEDFCSNSQGSYYGEDNRVVCVIPGGPACKSNFFNKQSSLLTVNEMDIICAAFSGQLDLSILKSPCILVSSSCSTDETVVADSETEVETATSAHSNEAFSSGNNVKYEKTEELYDDSDTLDKRKHERIEASSEYVSTRLHDIKRAKTETSLDGASVRSHATGFRNDNDGIKVKKGKVDDYESGNSDIVYSQYLVVRDTNICPSISTAPNSNVPNFKRFRKAQTQSGNSFDNLVPFAKYPHKDSDYGNDEMSELVKEEKRRKKMEALADDLFNNEKARKRGTVGSLHGILTS 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2806 553 Gene3D - 4 122 - -
Ssu6g2806 553 CDD BRCT 127 190 - -
Ssu6g2806 553 SUPERFAMILY SMAD/FHA domain 16 124 IPR008984 GO:0005515
Ssu6g2806 553 ProSiteProfiles Forkhead-associated (FHA) domain profile. 25 84 IPR000253 GO:0005515
Ssu6g2806 553 Coils Coil 515 535 - -
Ssu6g2806 553 Pfam FHA domain 25 112 IPR000253 GO:0005515
Ssu6g2806 553 CDD FHA 2 120 IPR000253 GO:0005515
Ssu6g2806 553 PANTHER NIBRIN-RELATED 2 537 IPR040227 GO:0006302|GO:0007095|GO:0030870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2806 K10867 - gmx:100783205 940.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2806 6 65129601 65139951 Ssu6g2806 6 65129601 65139951 ECH