Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2546 ATGTGTAATCCCAAGCCATCTTCAGCATCCCCATTTCTAAGTCCCACAAAATCCCACCCCAAAGTGGTGTATCCTTCCCCTGGTGATCAAGCTCAAGATGAATTGCACAGATGGCCAACTCTTAATGAGGCCATGGCAGAAATCAAGGCAATAGGGAGGATATCAGGCCCAACAGCCATCACTGGGTTACTCTTATATTCAAGAGCTATGATCTCTATGATTTTCCTTGGCTATCTTGGTGAGATGGAACTAGCAGGAGGGTCTCTCTCTATTGGTTTTGCCAACATCACTGGCTACTCTGTGATCTCTGGATTAGCCATGGGGATGGAACCTATTTGTGGACAAGCTTATGGAGCAAAACAATGGAAGCTACTTGGCTTGACAATGCAGAGAACTATTCTCCTTCTCCTCTCAACCTCCATCCCCATCTCATTCATGTGGGTCAACATGAAGAGAATCCTCTTGTGGTCAGGCCAAGACCAAGAAATAGCATCAGTGGCACAATCTTTCATCATTTTCTCTATACCTGACCTTTTTTTGCTCTCACTTCTCCACCCGCTAAGAATCTACCTCAGGACTCAAAGCATCACATTGCCATTGACATATTGCTCAGCCATCTCAGTTCTGCTCCATGTGCCTTTGAATTTCCTCCTTGTGGTTCATCTCAAGATGGGAATTGCTGGTGTGGCCACAGCAATGGTGTTGACTAACCTCAACctcattctcttcctctccTCCTTTGTCTACTTCTCTGGTGCACACAAGGACTCATGGGTTCCCCCAAGTGTGGACTGCATCAAGGGGTGGTCTTCATTGCTGTCACTTGCAGTTCCAACCTGTGTTTCAGTTTGCCTTGAGTGGTGGTGGTATGAGTTCATGATAATAATGTGTGGCCTTTTGGTCAATCCAAAAGCAACCATTGCTTCAATGGGAATCCTCATCCAAACAACATCTTTAGTCTATGTGTTCCCATCATCACTCAGCCTTGGTGTTTCTACAAGAGTAGGGAATGAGCTAGGTGCAAACAACCCTAGAAAAGCAAGAGTTTCCATGATAGTGTCACTCTTTTGTGCTGTGGGTTTAGGCCTTGGAGCCATGCTGTTCACCACCTTGATGAGGCACCAATGGGGAAGGTTGTTCACCAATGACCATGAGATTTTGGAACTCACATCACTAGTGCTGCCAATTGCTGGTCTTTGTGAGCTTGGGAACTGCCCACAGACCACAGGTTGTGGAGTCCTTAGAGGCAGTGCAAGACCCACCATTGGTGCCAACATCAATTTGGGCTCATTTTATTTGGTGGGTATGCCAGTGGCTATGCTTCTGGGCTTTGTGGCCAAAATGGGGTTTGCAGGGCTGTGGCTTGGGTTGCTTGCAGCCCAAGCCTCCTGTGCTGGTCTCATGCTCTTTGTTCTTTGCAGAACAGATTGGAATGTGCAAGTAGAAAGAGCCAAGGAACTCACAAAAACTTCAATAATAACCACCACTTGTTGTTCTGCTGCTCCTGATTCTAACTCTAAATTACCTACATTCACCGAGACAGAGGCTAACATGACCAACAATGCTCATGCTTGTCTTGAAGAGATTGTTATTACTGGTGGTGATGAGCTTACCAAGATATCTTCACTTGAAACAGATCCACTGATCATACCCACTACCAAACACACTGAAGTTTAG 1677 0.4538 MCNPKPSSASPFLSPTKSHPKVVYPSPGDQAQDELHRWPTLNEAMAEIKAIGRISGPTAITGLLLYSRAMISMIFLGYLGEMELAGGSLSIGFANITGYSVISGLAMGMEPICGQAYGAKQWKLLGLTMQRTILLLLSTSIPISFMWVNMKRILLWSGQDQEIASVAQSFIIFSIPDLFLLSLLHPLRIYLRTQSITLPLTYCSAISVLLHVPLNFLLVVHLKMGIAGVATAMVLTNLNLILFLSSFVYFSGAHKDSWVPPSVDCIKGWSSLLSLAVPTCVSVCLEWWWYEFMIIMCGLLVNPKATIASMGILIQTTSLVYVFPSSLSLGVSTRVGNELGANNPRKARVSMIVSLFCAVGLGLGAMLFTTLMRHQWGRLFTNDHEILELTSLVLPIAGLCELGNCPQTTGCGVLRGSARPTIGANINLGSFYLVGMPVAMLLGFVAKMGFAGLWLGLLAAQASCAGLMLFVLCRTDWNVQVERAKELTKTSIITTTCCSAAPDSNSKLPTFTETEANMTNNAHACLEEIVITGGDELTKISSLETDPLIIPTTKHTEV 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2546 558 Pfam MatE 57 217 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu6g2546 558 Pfam MatE 278 440 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu6g2546 558 MobiDBLite consensus disorder prediction 1 20 - -
Ssu6g2546 558 CDD MATE_eukaryotic 47 483 IPR045069 GO:0042910|GO:1990961
Ssu6g2546 558 MobiDBLite consensus disorder prediction 1 15 - -
Ssu6g2546 558 PANTHER MULTIDRUG RESISTANCE PROTEIN 27 501 - -
Ssu6g2546 558 TIGRFAM matE: MATE efflux family protein 63 454 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu6g2546 558 PANTHER PROTEIN DETOXIFICATION 27 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2546 Ssu-Chr6 59985736 59987628 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2546 K03327 - gmx:100783792 913.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2546 6 59985736 59987628 Ssu6g2546 6 59985736 59987628 ECH