Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2545 ATGGCCGTTTCAACCAGTTTCTCGGGTGCAAAGTTGGAGGCTTTGTTGCTGAAATGTGGTTCCTCCAATGCTACCTCCACCACCCCTTTATCGCTTTCTGGCAAAAACAGAAAGACACTTATTCAGAGAGGGGCCATTCGCTGCGAGGTTTCTGCTTCTGATGTTGTGGTTGATCCCACCAAGAAAGCCACTACCGTCTCTGCTCTCGAGCAGCTTAAGACCTCTGCAGCTGATAgGTATACAAAGGAAAGGAGCAGCGTTATGGTTATTGGACTGAGTGTGCATACTACACCGGTGGAAATGCGTGAAAAACTTGCCATACCAGAAGCAGAATGGCCCAGAGCCATAGCGGAGCTTTGTAGTCTGAACCATATTGATGAAGCAGCTGTTCTGAGCACCTGCAACCGAATGGAGATATATGTTCTTGCTCTGTCCAAGCACCGTGGTGTCAAAGAAGTCACCGAATGGATGTCCAAAACAAGTGGGATCCCAGTTGCAGATCTTTGCCAGCATCAGTTTCTGCTTTACAACAAAGATGCCACACAGCACCTTTTTGAAGTATCTGCAGGTCTTGATTCTCTTGTCTTGGGAGAAGGTCAAATCCTTGCCCAGGTGAAGCAAGTTGTCAAAGTTGGACAAGGAGTTAATGGCTTTGGGAGGAACATTAGTGGGCTATTCAAGCATGCAATCACTGTTGGGAAGAGGGTTAGAACTGAGACTAACATTGCTGCTGGTGCAGTTTCTGTTAGCTCAGCAGCTGTTGAACTGGCCTTGATGAAGCTACCTGAAGCCTCACATGAAAATGCAAGGATGTTGGTCATTGGAGCTGGGAAAATGGGAAAGCTTGTGATCAAGCATTTGGTGGCAAAAGGGTGCACAAAGATGGTGGTTGTCAATAGAAGTGAGGAGAGAGTTGCGGCAATCCGCGAAGAGCTTAAGGATGTTGAGATAATCTACAAACCACTTACAGAAATGCTCACATGTATTGGTGAGGCAGATGTAGTTTTCACCAGCACAGCATCAGAGAATCCATTGTTCTTGAAGGATGATGTTAAGGACCTCCCTCCTGCCACTGATGAAGTTGGAGACCGTCGCTTTTTCATTGATATTTCTGTTCCTAGGAATGTTGGATCATGTGTCTCAGATCTTGAGTCAGTGACAGTGTACAATGTTGATGACCTTAAGGAGGTTGTGGCAGCTAATAAAGAGGATAGGCTAAGAAAAGCTATGGAAGCTCAAGCAATCATTAGTGAAGAATCAAAACAATTTGAGGCTTGGAGGGACTCATTGGAAACTGTTCCTACCATTAAAAAGTTGAGGGCCTATGCTGAAAGAATAAGGCTGGCTGAGCTTGAGAAGTGTCTAGGTAAGATGGGGGATGATATCAACAAGAAGACACAGAGGGCTGTGGATGATCTTAGTAGGGGTATAGTGAACAAGTTGCTTCATGGGCCAATGCAACACTTGAGGTGTGATGGTAGTGATAGTAGGACTCTGAGTGAGACCCTTGAGAACATGCATGCTTTGAATAGAATGTTCAACCTTGAGactgaaatttctattttggagCAGAAGATTCGAGCCAAGGTGGAGCAAAAACCATAG 1605 0.4492 MAVSTSFSGAKLEALLLKCGSSNATSTTPLSLSGKNRKTLIQRGAIRCEVSASDVVVDPTKKATTVSALEQLKTSAADRYTKERSSVMVIGLSVHTTPVEMREKLAIPEAEWPRAIAELCSLNHIDEAAVLSTCNRMEIYVLALSKHRGVKEVTEWMSKTSGIPVADLCQHQFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPEASHENARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELKDVEIIYKPLTEMLTCIGEADVVFTSTASENPLFLKDDVKDLPPATDEVGDRRFFIDISVPRNVGSCVSDLESVTVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFEAWRDSLETVPTIKKLRAYAERIRLAELEKCLGKMGDDINKKTQRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLSETLENMHALNRMFNLETEISILEQKIRAKVEQKP 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2545 534 Coils Coil 512 532 - -
Ssu6g2545 534 Gene3D - 246 398 - -
Ssu6g2545 534 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 90 240 IPR015895 GO:0008883|GO:0033014|GO:0050661
Ssu6g2545 534 ProSitePatterns Glutamyl-tRNA reductase signature. 183 206 IPR018214 GO:0008883
Ssu6g2545 534 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 411 515 IPR015896 GO:0008883|GO:0033014|GO:0050661
Ssu6g2545 534 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 409 513 IPR036453 GO:0008883|GO:0033014|GO:0050661
Ssu6g2545 534 Pfam Shikimate / quinate 5-dehydrogenase 255 397 IPR006151 -
Ssu6g2545 534 PANTHER GLUTAMYL-TRNA REDUCTASE 1 533 - -
Ssu6g2545 534 Coils Coil 298 318 - -
Ssu6g2545 534 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 533 - -
Ssu6g2545 534 Hamap Glutamyl-tRNA reductase [hemA]. 86 513 IPR000343 GO:0008883|GO:0033014|GO:0050661
Ssu6g2545 534 TIGRFAM hemA: glutamyl-tRNA reductase 87 496 IPR000343 GO:0008883|GO:0033014|GO:0050661
Ssu6g2545 534 CDD NAD_bind_Glutamyl_tRNA_reduct 88 409 - -
Ssu6g2545 534 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 87 242 IPR036343 GO:0008883|GO:0033014|GO:0050661
Ssu6g2545 534 Gene3D - 85 245 IPR036343 GO:0008883|GO:0033014|GO:0050661
Ssu6g2545 534 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 245 405 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2545 Ssu-Chr6 59882834 59886945 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2545 K02492 - gmx:100815985 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2545 6 59882834 59886945 Ssu6g2545 6 59882834 59886945 ECH