Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2544 ATGCACGCATCCACGTCTGCCCCGTCTGCGACGCCACCTGGAACGACGTGCCGCTCCAACAAAACGACGCCGTCGTTCGCACCGTCGAAGCCGAGAAACAACAACCGACTCATCATCACTCCGATTCGGTCACGCCCTACGACGACGACGAGCCTCTCCCTTCTCCTCTCACGTGCTCCACGCAAATCGTTCCAATTCCCGAAGCAGACGAAAACACCGAAGACGAACGACGACGTAGCCGAGTTTCCCGGCTTCTTCGTCGATCCAAAGCCTCAATCGTCGTTACGACCAAACGACGGCGATTCGAGGAGCGTTCGAGTGAAGTTGATGCCGGAGTGCGCGGTCATATCAGTTTCGCAAAGCCACGAAACCTACGCTGTGGTTTTGAGAGTGAAGGCTCCGCCGCCGTCACCGCCGCGGCGGCGGCGGCCGCCGATGGATCTCGTGACGGTGCTTGACGTTGGCAACAGCATGAGCGGCGCGAAGCTTCACATGCTAAAGCGCGCGATGCGTTTGGTTGTATCCTCTCTCGGCGCGGCTGACCGGCTCTCCGTCGTGGCTTTCTCGGCTAATTCCAAACGGTTGCTTCCTTTAAGAAGAATGACGGCTCAGGGCCAGCGCTCGGCTCGGCGCGTCGTGGATCGGCTCGTGTGCGGCCGAGGAAACAGCGTTTGTGAAGAAGCTACGAAGAAAGCCGCGAAGGTTCTCGAAGACCGGAGAGAGAGAAACCCCCTCGCCAAGATCTTGCTCCTATCGGACGGTCAcgataacaacaacaatcaacggAGATGCTTAAGCCACGTGTCATCCTCCCGGTTCGATTGTGTCGAAGTTCCGGTTCATTCGTCTGGGTTCGGATTCTCCGGAACACTCGAACCGCTTGAGAATGATTTCGCAGAATACGTTAATAGTACATTGAGGGTAACGGTGCAGGATTTACGAATTCAGCTTGGCTTATCGGCGCCGGCTGAAATCCGAGCCGTTTACTCGTGCAGTGGGGGACCCACTGCGCTGAGCTCAAGCGCGGCTCGGCTTGGTGACTTGTACACTGAAGAGGAAAAGGAGTTGTTGGTGGAGGTTAGAGTGCCCACGTCAGCATTGGGGACCCACCACGTGATGACGGTGCGGTGTGTTAACAAAGACGCTGCTTCTCATGAGTTCGTGTACGGTGCGGAACACGCGTTTACGGTGTTGCCGCCTAGGAGTACTTCAGTTTGTGGCGGCAGGGTTGAGAGGCTGAGGAATGTGTTTGTTACGAGCCGAGCCGTAGCCGAGTCGCGGAGACTGGCGAAGCATAGCGAGTTTTCGAGTGCTCATCATTTGCTTGTTTCGGCTCGCGCGCTTCTGGCGCAGTTCGGCTCGGCTGAGGAGTACGTGCGCGGCTTGGAAGCCGAGCTTGAGGAGCTCCAGTGGCGGAGGCAGCAAGTGGAGACGGTGGGGATGGGGCGGAGGAGAGAGGGCGAGAGGGAGGTTACGGTGGATGAGAAGGGTGAGGCGTTGACGCCGACGTCGGCTTGGAGAGCCGCTGAGAAGCTGGCTAAGATGGCTATTATGAAGAAGTCGTTGAATAAAGTTAGTGACTTGCACGGCTTTGAGAACGCTAGGTTTTAA 1611 0.5661 MHASTSAPSATPPGTTCRSNKTTPSFAPSKPRNNNRLIITPIRSRPTTTTSLSLLLSRAPRKSFQFPKQTKTPKTNDDVAEFPGFFVDPKPQSSLRPNDGDSRSVRVKLMPECAVISVSQSHETYAVVLRVKAPPPSPPRRRRPPMDLVTVLDVGNSMSGAKLHMLKRAMRLVVSSLGAADRLSVVAFSANSKRLLPLRRMTAQGQRSARRVVDRLVCGRGNSVCEEATKKAAKVLEDRRERNPLAKILLLSDGHDNNNNQRRCLSHVSSSRFDCVEVPVHSSGFGFSGTLEPLENDFAEYVNSTLRVTVQDLRIQLGLSAPAEIRAVYSCSGGPTALSSSAARLGDLYTEEEKELLVEVRVPTSALGTHHVMTVRCVNKDAASHEFVYGAEHAFTVLPPRSTSVCGGRVERLRNVFVTSRAVAESRRLAKHSEFSSAHHLLVSARALLAQFGSAEEYVRGLEAELEELQWRRQQVETVGMGRRREGEREVTVDEKGEALTPTSAWRAAEKLAKMAIMKKSLNKVSDLHGFENARF 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2544 536 Coils Coil 459 479 - -
Ssu6g2544 536 MobiDBLite consensus disorder prediction 63 103 - -
Ssu6g2544 536 ProSiteProfiles VWFA domain profile. 147 295 IPR002035 -
Ssu6g2544 536 SUPERFAMILY vWA-like 142 286 IPR036465 -
Ssu6g2544 536 Gene3D von Willebrand factor, type A domain 147 310 IPR036465 -
Ssu6g2544 536 MobiDBLite consensus disorder prediction 1 37 - -
Ssu6g2544 536 SMART VWA_4 145 351 IPR002035 -
Ssu6g2544 536 Pfam von Willebrand factor type A domain 148 255 IPR002035 -
Ssu6g2544 536 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 76 536 - -
Ssu6g2544 536 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 76 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2544 Ssu-Chr6 59851948 59853558 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2544 - - gmx:100795015 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2544 6 59851948 59853558 Ssu6g2544 6 59851948 59853558 ECH