Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2535 ATGGCTTCTTTCCCTTCCACTGCTGTCATTGCAACTCTCAAGCTCCACCCGCAGACACAGTTCAGAACATACCCGCCAACCACTGACAagGGTCAAAGCATTTCTTTCCAGAAAAGCCACAGATTCACGCATTTGGATTTTCGGGAAGCACTTTCGTTGACCAACGAGGGGACAGAGGAGGTGGAACAATCTTTCTACGTTCCCTTTTTGCAACAATGCTTGGACAAGTGCTCCTATTCAGGCACACAAATTGTTCACGGTCATGTCATGAAAACGGGTACCCATGAAGATGTTTTTGTCATGTCATTTCTTGTCAATGTATATGCCAAATGTGGGAACATGGAGGATGCTCACAGGGTCTTCAACAGCATGCCTAGAAGAAACGTGGTGGCGTGGACCACGTTAATGGTGGGTTATGTGCAGAACTCGCAGCCAGAGCATGCCATTCACGTGTTTCAAGAGATGTTGCATGCAGGAAGTTACCCTTCTGTTTACACCCTTTCTGTAGCTCTAAATGCTTGCATTTCTTTGCAGTCTCTCAAGTTAGGAGATCAATTCCACGCTTACATAATCAAATACTTTGTTGACTTTGACACCAGTGTTGGCAATGCACTTTGTAGTTTATACTCCAAATGTGGCAGGTTGGAGTATGCTCTGAAAGCATTTAGGAGAATCAGAAAAAAGAATGTCATTTCGTGGACTTCAGCTGTTTCTGCTTGTGGGGACAACGGTGCACCTGTGAAGGGGTTAGGACTTTTTGTTGAGATGGTTTCTGAGGACGTAATGCCTAATGAGTTCACTTTAACTAGTGCCTTGAGCCAGTGTTGTGAAATTCTGTCTCTGGAATTTGGGACTCAGGTTCGCACGTTGTGCGTTAAATTTGGCTATGAATCAAACGTACGCGTTAGGAACTCTTTGTTGTATTTGTACCTCAAATGTGGCCGTGTTGGTGAGGCTCAAAGGCTGTTTAATGGAATGGATGATGCCAGTTTGGTTACATGGAATGCGATGATTGCCGGGCATGCACAGATGATGGAAATCACAAAGGATAATCTTTCTGCAAGCCAAAGTGGAACTGAAGCACTGAAACTTTCCTCCAAGTTGAATCGGTCGGGCATGAAACCTGATCTGTTTACCTTCTCTAGTGTCTTAAGTGTTTGTAGTAGAATGGTGGCTTTAGAGCAGGGGGAACAAATTCATGCACAGGCTATGAAAACCGGATTCTTGTCGGATGTGGTTGTAGGTACTTCACTAATTAATATGTACAATAAATGTGGAAGCATTGAGAGGGCTAGCAAAGCATTTTTGGAGATGTCTACTAGAACTATGATATCATGGACTTCTATGATTACAGGTTTTTCGCAGCATGGTATGTCACAGCAAGCAGTGCATCTTTTTGAGGATATGAGACTAGCAGGAGTTAGACCAAACCAGATCACTTTTGTAGGTGTTTTAGCAGCATGTAGCCATGCTGGCATGGTCAGTGAAGCACTCAACTACTTTGAGATTatgcaaaagaaatataaaattaagccTGTAATGGACCATTATGCTTGCATGGTTGACATGTTTGTGAGGTTAGGTCGGCTGGAGGAAGCTCTCAATttcattaagaaaatgaattatgGGCCTAGTGAGTATATTTGGTCAAACTTGATTGCTGGTTGTAGAAGTCATGGGAATCTGGAATTGGGGTTTTATGCTGCTGAACAGCTACTAAGTCTCAAACCAAAAGATACAGAGACAtatgtgttgttgttgaatATGTACCTCTCAGCTGGGCGTTTTGAGGATGTTTCAAGGGTGAGGAAGATGATGGAAGAGGAGAAAGTTGGAAAATTGAAGGATTGGAGCTGGATTAGCATTAAAGACAAAGTGTATTCATTCAAAACCAACGACAAAACACACCCACAGAGTTCACTAATATGTAAATCATTGGAGGATTTACTTGCCAAAGCACAGAATCTTGGATACGAGATGCTAGAAAGTGTGGAAATAAGTGATGGAGAGGAGGAGGAAAAGACACCCTCCCCTGCCATTTATCACAGCGAGAAGCTGGCCATTACATTTGGGTTGGAGAACTTACCAAAACCCTCTCCAATAAGAGTTGTCAAGAGCACCTTAATCTGCAGGGATAGCCATAATTTTATTGAGTACGTCTCAACACTGACCGGTAGAGAGATCATCGTTAGAGATGGTAAGCGGCTTcacaaatttgtcaatggacAATGCTCGTGTGGAAATTTTGGTGGTTTTCTCTAA 2262 0.4173 MASFPSTAVIATLKLHPQTQFRTYPPTTDKGQSISFQKSHRFTHLDFREALSLTNEGTEEVEQSFYVPFLQQCLDKCSYSGTQIVHGHVMKTGTHEDVFVMSFLVNVYAKCGNMEDAHRVFNSMPRRNVVAWTTLMVGYVQNSQPEHAIHVFQEMLHAGSYPSVYTLSVALNACISLQSLKLGDQFHAYIIKYFVDFDTSVGNALCSLYSKCGRLEYALKAFRRIRKKNVISWTSAVSACGDNGAPVKGLGLFVEMVSEDVMPNEFTLTSALSQCCEILSLEFGTQVRTLCVKFGYESNVRVRNSLLYLYLKCGRVGEAQRLFNGMDDASLVTWNAMIAGHAQMMEITKDNLSASQSGTEALKLSSKLNRSGMKPDLFTFSSVLSVCSRMVALEQGEQIHAQAMKTGFLSDVVVGTSLINMYNKCGSIERASKAFLEMSTRTMISWTSMITGFSQHGMSQQAVHLFEDMRLAGVRPNQITFVGVLAACSHAGMVSEALNYFEIMQKKYKIKPVMDHYACMVDMFVRLGRLEEALNFIKKMNYGPSEYIWSNLIAGCRSHGNLELGFYAAEQLLSLKPKDTETYVLLLNMYLSAGRFEDVSRVRKMMEEEKVGKLKDWSWISIKDKVYSFKTNDKTHPQSSLICKSLEDLLAKAQNLGYEMLESVEISDGEEEEKTPSPAIYHSEKLAITFGLENLPKPSPIRVVKSTLICRDSHNFIEYVSTLTGREIIVRDGKRLHKFVNGQCSCGNFGGFL 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2535 753 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 127 IPR002885 -
Ssu6g2535 753 Pfam PPR repeat family 444 488 IPR002885 -
Ssu6g2535 753 Pfam PPR repeat family 127 174 IPR002885 -
Ssu6g2535 753 PANTHER OS01G0913400 PROTEIN-RELATED 59 690 - -
Ssu6g2535 753 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 579 613 IPR002885 -
Ssu6g2535 753 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Ssu6g2535 753 Gene3D Tetratricopeptide repeat domain 182 281 IPR011990 GO:0005515
Ssu6g2535 753 Gene3D Tetratricopeptide repeat domain 69 181 IPR011990 GO:0005515
Ssu6g2535 753 Pfam PPR repeat 231 260 IPR002885 -
Ssu6g2535 753 Pfam PPR repeat 304 327 IPR002885 -
Ssu6g2535 753 Pfam PPR repeat 517 540 IPR002885 -
Ssu6g2535 753 Pfam PPR repeat 207 230 IPR002885 -
Ssu6g2535 753 Pfam PPR repeat 416 439 IPR002885 -
Ssu6g2535 753 Pfam E motif 559 620 IPR046848 -
Ssu6g2535 753 TIGRFAM PPR: pentatricopeptide repeat domain 130 163 IPR002885 -
Ssu6g2535 753 TIGRFAM PPR: pentatricopeptide repeat domain 444 477 IPR002885 -
Ssu6g2535 753 TIGRFAM PPR: pentatricopeptide repeat domain 104 130 IPR002885 -
Ssu6g2535 753 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 59 690 - -
Ssu6g2535 753 Gene3D Tetratricopeptide repeat domain 505 674 IPR011990 GO:0005515
Ssu6g2535 753 Gene3D Tetratricopeptide repeat domain 350 504 IPR011990 GO:0005515
Ssu6g2535 753 Gene3D Tetratricopeptide repeat domain 282 349 IPR011990 GO:0005515
Ssu6g2535 753 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Ssu6g2535 753 Pfam DYW family of nucleic acid deaminases 666 749 IPR032867 GO:0008270
Ssu6g2535 753 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Ssu6g2535 753 SUPERFAMILY TPR-like 97 599 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2535 Ssu-Chr6 59648526 59651233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2535 66 749 Glycoside Hydrolase AT3G49170 36.115 4.39e-147 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2535 - - gmx:100781103 1292.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2535 6 59648526 59651233 Ssu6g2535 6 59648526 59651233 ECH