Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2534 ATGGCCATGGCTCTTCGCAGACTTTCCTCCACCATCAACAAACCTTTCGCCAACGCCACTTCCATTTATCGCacgTCCTCTTCGCTCTCCGCTCACGAAAAAGACAAATCTCACGCCGATTGGATAAAGCAGCTCAACGATCCTCTCGAGGCCGTCGATCCCGAGATCGCAGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAGGGGCTCGAACTTATACCTTCAGAAAACTTCACGTCGCTGTCGGTGATGCGTGCCGTTGGATCGGTGATGACGAATAAATACAGCGAAGGATATCCCGGTGCTAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGACCTTGTGTCAGAAGCGTGCGCTGGAAGCTTTTCAGTTGGATCCCGCAAAATGGGGAGTCAATGTGCAGTCATTATCTGGATCCCCTTCTAACTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCACTTGATCTTCCCCATGGTGGGCATCTATCGCATGGTTATCAGACTGACACCAAGAAGATATCAGCTGTATCtatattctttgaaacaatGCCATACAGATTGAATGAGAGCACCGGTTATATCGATTATGACCAGtTGGAGAAAAGTGCAGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCGAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTCCGCAAGGTCTGTGATAAGCAAAAGGCAGTTCTGTTGGCTGATATGGCACATATAAGTGGATTGGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATGTTGTAACAACCACAACACATAAGTCACTTCGTGGACCACGTGGGGCTATGATTTTCTTCAGGAAGGGTGTGAAAGAGATAAACAAGCAAGGGAAGGAAGTGTTGTATGACTATGAAGACAAAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCACACAATCACACTATTACAGGCTTAGCAGTTGCACTGAAGCAGGCTATGACACCAGAATTCAAGAATTACCAAAAGCAAGTACTTAGCAACTGCTCGGCATTTGCACAGAGTTTGTTAGAGAAGGGCTATGAACTTGTATCTGGTGGAACTGAGAATCACTTAGTGTTGGTGAACTTAAGAAACAAGGGCATTGATGGCTCTAGGGTTGAGAAGGTCTTAGAATCAGTTCATATAGCTGCCAATAAAAATACCGTTCCAGGGGATGTGTCTGCTATGGTTCCTGGAGGCATTCGAATGGGAACCCCTGCTCTCACATCAAGGGGATTTGCTGAGgaagattttaaaaaagtagcTGAATACTTTGATGCGGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAATACCAATGGTACAAAGTTGAAGGATTTTGTGGCAGCTATGCAATCAGATGAACACATTCAATCTAAGATTACTAATCTCCGTCATGAAGTAGAGGATTACGCTAAGCAGTTTCCCACTATTGGTTTTGATAAAGAAACAATGAAGTATAGCAAGTGA 1536 0.4329 MAMALRRLSSTINKPFANATSIYRTSSSLSAHEKDKSHADWIKQLNDPLEAVDPEIADIIELEKARQWKGLELIPSENFTSLSVMRAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFQLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAALFRPKLIVAGASAYARLYDYARVRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQKQVLSNCSAFAQSLLEKGYELVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFAEEDFKKVAEYFDAAVKLALQIKENTNGTKLKDFVAAMQSDEHIQSKITNLRHEVEDYAKQFPTIGFDKETMKYSK 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2534 511 Pfam Serine hydroxymethyltransferase 49 446 IPR039429 -
Ssu6g2534 511 Gene3D Aspartate Aminotransferase, domain 1 53 498 IPR015422 GO:0003824
Ssu6g2534 511 Hamap Serine hydroxymethyltransferase [glyA]. 48 501 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Ssu6g2534 511 PIRSF SHMT 30 506 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Ssu6g2534 511 Gene3D - 78 351 IPR015421 GO:0003824
Ssu6g2534 511 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 4 510 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Ssu6g2534 511 SUPERFAMILY PLP-dependent transferases 40 502 IPR015424 -
Ssu6g2534 511 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 272 288 IPR019798 GO:0030170
Ssu6g2534 511 PANTHER SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL 4 510 - -
Ssu6g2534 511 CDD SHMT 52 473 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2534 Ssu-Chr6 59632336 59645060 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2534 K00600 - gmx:100816213 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2534 6 59632336 59645060 Ssu6g2534 6 59632336 59645060 ECH