Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2524 ATGGACGCGGTTTCGGATCAAGACACTAGTATATGCGCTCACTGTGATCGGGCTATCCCTGCTGCAAATATCGAATTGCATTATGCTCATTGCTCTCGGAACCTTGAAAAATGCAAAGTTTGTGGTGATATGGTTCCCAGAAAAAATGCAGAGGATCACTATTTAAGCACCCATGCACCGGTTTCCTGTTCATTATGCAGTGAGACAATGGAGCGTGATATTTTAGATATCCATAAAGGTGAAAATTGCCCTCAAAGGATTGTCACTTGTGAGTTCTGTGAGTTTCCATTGCCAGCAATTGATCTGGCTGAGCATCAGGAAGTATGTGGGAATCGAACAGAACTTTGTCACCTTTGTAACAAATATGTTAGACTTCGTGAAAGATTCAGTCATGAAGCTCGGTGCAATGGCATCCAAGATAGTTCTTTGGGCTCTTCAAGGAATGTGAGAGAAGCTGAGAGAGAGGAAGGTGCTAGAAGAAGGCGGCAGAATGACTTCTCAACTAGGCGCCTTCTTTTCACAATAGCCATCACTGGTATTGCTGTCATTCTGGGATCTTTTTTCTACAGAGGAAGGCAGAACCCAGTGATGTGCATTAGCAACAAAGCCGAAACATTTTAG 621 0.4348 MDAVSDQDTSICAHCDRAIPAANIELHYAHCSRNLEKCKVCGDMVPRKNAEDHYLSTHAPVSCSLCSETMERDILDIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCNKYVRLRERFSHEARCNGIQDSSLGSSRNVREAEREEGARRRRQNDFSTRRLLFTIAITGIAVILGSFFYRGRQNPVMCISNKAETF 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2524 206 PANTHER TRAF-TYPE ZINC FINGER PROTEIN-RELATED 3 191 - -
Ssu6g2524 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 57 IPR013083 -
Ssu6g2524 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 111 IPR013083 -
Ssu6g2524 206 PANTHER XIAP-ASSOCIATED FACTOR 1-LIKE 3 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2524 Ssu-Chr6 59419535 59426134 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2524 - - gmx:100811867 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2524 6 59419535 59426134 Ssu6g2524 6 59419535 59426134 ECH