Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2518 ATGGGTTGGGGAGAAGCTCTTTATACACTTTTGACCAGATCATTCATCGTCCTCGCTTGGCCTCCATTTAGTTTGCTTTGTCCATTatTCATTTCTGTTCGAGCAATGGAGAGTGGTTCGCGTTCCAGCAACCAGCGATGCCTTATTTTTTGGGTTCTGTTTTCGTTGTCTATGATCATGGAATGGGGACTTTCAGTGTTATTTaacagCCTCCCATGGTGGCCTCATATGAAATCCATAGCTACTATCTTGCTGTTGATACCTTATGTTGGTGCAGCACCATATAtctataaattcttaattagacACTACTGTACTTGGAACCTATTTACAAGGATATCAAACATCTTCAGTCAGAAGAGCACACATTTCGAATCAGATGAGGATAGTGAACTTGTTGATGTCTCTGACCAGACAATTACGACAAGTcaaatacaagaaaagaaaCTTGAAGCATATCAGGAGATAGATGACCTTGCTGGTTGTGACAAGACAGAATGCAGTTATAAAAGGCTATCTGGTATAAAGCTAGTCCAGAAGGAATGGAGTTGTGCATTATGTCAGATTAGTACTACCAGTGAACATTGCTTAAGGGCACATCTTAAAGGGAAAAAACACAAGGCTAAGGAAGAAGAGCTTAGAGTTGAGTTTCATGCAACAAATAGCAATAAAAGAATCAATGGGATGGTTCTACTAAGGAATCTCAACCAAATTGCAAACATTCTCAATCCAGTTTCCAGATCCATGAGATGGTGTAAATGGAGAAAGCCAGAGTTTGGATGGACAAAATTAAATACTGACGGTTCTATACATAAAGAAACTGCTAGTTTTGGTGGGCTGCTTCGTGATTACAGGGGCACACCAATATGTGCTTTTGTCTCTAAAGCTCCTCAAGGAGATGTTTTCTTGGTTGAGCTGTGGGCCATATGGAGAGGCCTTGTTCTTTCCTTGGGTCTTGGGATTAAAGCAATATGGGTAGAATCAGACTCCATGAGTGTTGTGAAGACGGTTAACAGAAAACAACTTTGTCCAAAAGCTGATAGCTATTTGAAACAAATCTGGAAACTATTAAAGaagtttgataaatataaaatttctcacTCATGGCGTGAAACTAATAGAGCAGCAGATCATCTTGCTAAGATGGATCTTTGGGGAAACGATGTGGTTTTGTGGCCGGTTGATTTTCCACCTAGCCTTTTCAGTATCATTAAAGATGATGCCAAAGGAAAGAAATATCTTAGAAGATGA 1251 0.3821 MGWGEALYTLLTRSFIVLAWPPFSLLCPLFISVRAMESGSRSSNQRCLIFWVLFSLSMIMEWGLSVLFNSLPWWPHMKSIATILLLIPYVGAAPYIYKFLIRHYCTWNLFTRISNIFSQKSTHFESDEDSELVDVSDQTITTSQIQEKKLEAYQEIDDLAGCDKTECSYKRLSGIKLVQKEWSCALCQISTTSEHCLRAHLKGKKHKAKEEELRVEFHATNSNKRINGMVLLRNLNQIANILNPVSRSMRWCKWRKPEFGWTKLNTDGSIHKETASFGGLLRDYRGTPICAFVSKAPQGDVFLVELWAIWRGLVLSLGLGIKAIWVESDSMSVVKTVNRKQLCPKADSYLKQIWKLLKKFDKYKISHSWRETNRAADHLAKMDLWGNDVVLWPVDFPPSLFSIIKDDAKGKKYLRR 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2518 416 Pfam Zinc-finger of C2H2 type 182 206 - -
Ssu6g2518 416 SUPERFAMILY Ribonuclease H-like 261 388 IPR012337 -
Ssu6g2518 416 Gene3D - 261 384 IPR036397 GO:0003676
Ssu6g2518 416 PANTHER HVA22-LIKE PROTEINS 4 416 IPR004345 -
Ssu6g2518 416 SMART ZnF_U1_5 179 213 IPR003604 GO:0003676|GO:0008270
Ssu6g2518 416 PANTHER PROTEIN A, PUTATIVE ISOFORM 1-RELATED 4 416 - -
Ssu6g2518 416 SUPERFAMILY beta-beta-alpha zinc fingers 175 216 IPR036236 -
Ssu6g2518 416 Gene3D Classic Zinc Finger 174 219 - -
Ssu6g2518 416 Pfam Reverse transcriptase-like 265 382 IPR002156 GO:0003676|GO:0004523
Ssu6g2518 416 CDD RNase_H_like 264 381 IPR044730 -
Ssu6g2518 416 Pfam TB2/DP1, HVA22 family 28 104 IPR004345 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2518 Ssu-Chr6 59321021 59324546 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2518 - - gmx:100787629 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2518 6 59321021 59324546 Ssu6g2518 6 59321021 59324546 ECH