Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2509 ATGGAAGAAACCCAACCTCTGAGCTCCAAGATCTCAACAGTGGTGCCAGCAACCCCGCGAGGCGACGAAAACAGCGTGCGCCGCCTCAGCTCCATGGACCTGCTCATGAAGCTTCACTACATCAGAGCCGTCTATTTCTTCATCAACGACGCAGCCCAAGGGCTCTCAATCTACGACCTCAAGAAACCCATGTTCCTCCTCCTGGACCAGGTCACGCACCTCTCGGGCCGGATCCGAACATCCGAATCGGGTCGGCCCTTCATAAAGTGCAACGACGCTGGCGTGCGCATCGCCGAGTCCCACCGTGACCACACCCTTCGGGAATGGTTCCAACAAAACGGGTGCTCCCACGAAGGTCTTGTCCACGATCACGTGCTTGGTCCTGACCTTGGTTTCTCTCCTTTGGTTTTTGTCAAGTTCACTTGGTTCAAATGTGGAGGACTCTCCATGGGACTCAGCTGGTCCCATGTCCTTGGAGACACTTTTTCGGCCTTAAACTTCATCACCAAGTGGAGTCAAATACTTGCGAGTCATGCACCACCAAAAGCCCTTCCCATGCCAATTCATAGAGAAACTGATTCCCCACACAACAATTCGGTTAACTATAATCCTATTTCTGTTAAAATGGCCATAACCGCAGGGGAGCACTGGCTTGCCACCAACAACACCAAAATGGTTACTCACACTTTTCACATCACTCCCAAACAACTCGACCATTTGCATTGTTGTGGAAACACAGTTGCTTGCATCAGGGGAGACTCTGAGCCAAAGGTAGTGACAATCTTCACACCTGGCACTAGTCGTAATGAATTCCCCTTCAATGACATGGTGATAAGCGTGGTTGAAGCGAATATGGTGGTTGGAAAATCTAACGTGTCAGATTTGGCGAGGCTAATTTGTGAGGAATTGAAGGTTGAGAATGACGTTGTGGAAAAGTTGGTGGAAGAAAGCCAAGGGAAAGGGGATTTTGTAATTTATGGAGCAAATTTGACATTTGTGGATTTGGAAGAAGGTGACGTGTATGGGGTTCTGTTGAATGGACAGAAACCAATCATGGCAAATTGTAGCATCCACGGGGTGGGTGATCAAGGGGTTGTTTTGGTGCTTCCAGCGCcggatgatgaagaagatgggAGTAATGGAAGAATGCTGACGGTTTCTTTGCCTGAAAAAGAAGTTAATCAGCTGAAAGATAAGGTAAGAGGAGAATGGGGTATTGAGTCACTTTCGTTCTAA 1236 0.4773 MEETQPLSSKISTVVPATPRGDENSVRRLSSMDLLMKLHYIRAVYFFINDAAQGLSIYDLKKPMFLLLDQVTHLSGRIRTSESGRPFIKCNDAGVRIAESHRDHTLREWFQQNGCSHEGLVHDHVLGPDLGFSPLVFVKFTWFKCGGLSMGLSWSHVLGDTFSALNFITKWSQILASHAPPKALPMPIHRETDSPHNNSVNYNPISVKMAITAGEHWLATNNTKMVTHTFHITPKQLDHLHCCGNTVACIRGDSEPKVVTIFTPGTSRNEFPFNDMVISVVEANMVVGKSNVSDLARLICEELKVENDVVEKLVEESQGKGDFVIYGANLTFVDLEEGDVYGVLLNGQKPIMANCSIHGVGDQGVVLVLPAPDDEEDGSNGRMLTVSLPEKEVNQLKDKVRGEWGIESLSF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2509 411 Gene3D - 219 399 IPR023213 -
Ssu6g2509 411 Pfam Transferase family 13 239 - -
Ssu6g2509 411 Gene3D - 8 204 IPR023213 -
Ssu6g2509 411 PANTHER PROTEIN ECERIFERUM 2 246 404 - -
Ssu6g2509 411 PANTHER PROTEIN ECERIFERUM 2 8 240 - -
Ssu6g2509 411 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 8 240 - -
Ssu6g2509 411 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 246 404 - -
Ssu6g2509 411 Coils Coil 300 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2509 Ssu-Chr6 59108722 59115102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2509 1 400 Acyl Lipid Metabolism Gene Families AT4G24510 41.055 2.51e-97 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2509 - - gmx:100814097 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2509 6 59108722 59115102 Ssu6g2509 6 59108722 59115102 ECH