Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2496 ATGCGTGTCACCATCGATCTAGGGTTTTGGAGCCTGGTCCTCGTCGCGGTGGTCTGCGTCGTCGCACCGGCGATCGGCTACGCGGTCAGTCGCCGGTGGCGGCGCGCGGCGGCGAGGGCGGAGGAGATCAGGAGGCTCCTGGTCCTCGCGGAGGAGGAGTCCGTCAGGGCCGAGACGGAGGCTTCGTACCAGTACGGCGCCGTTTCGGTCCCGAAGAACAGACTGTGCGCCGTGTGTTACTGCCCCACCACCACGCGGTGCGCGAGGTGCAAATCGGTTCACTACTGTTCTGGAAAGTGCCAAATTGTTCATTGGCGTCAAGGTCACAAAGCCGAATGCCGTCCTGCCAGCCCAACTTACCAGACTGATGATCTGGTAAGTGATCTTGGAAAGAAGGTTGCAGAACCAGACTACAGTGGAATCCATGATGAGAAGTCTCAGGTTGAAAGCACAGAGTATACTACATCCTCTGAGAAACCTCCATTGTCTGATATGAGCTGTTCTCCTGATATTTCACCTGCAAAGGATGATAATGTAAGAGTTGAATCTCTTCAAGAGGGAAATATTAAAGGCTCTAATTCTGAATTATCAAATAACTCATTCTCTGGATTCTCAGCTTCCACTGGTGCTAGTGAATCATCTGATGATTCTTCTGTCTGTGAGAGTGTCACCTCGAATGAGCATGAGAGATCCGTGGGACATATTTTTGTGGAACCGACCCATGACATTTCTGATACCACTTCAAGTCATAATAGCATTGGTGAATCCATTCCATTATCACCTAAGTTTGCTAGTTCGGTTGATTCAGTAGATGTTTATCCTgcaatgcataaattaaatcaaGTTAGAACTGGTTTTGGTAAAGAACAGAGTAAGTTCACATCAAATGGTAGTTCTGGTTTGAGTATGCGGAAAGGGGCAACAATTGAGCCTTCTACAGTGTCTTCTGGATTCTGGAATAAAACTCTTGATTCAGCGGGGATAAAAAATGACTCTAATAGTGACCCTCTTCCATCCCAGTCTGATGATTGTCCTCCAAAGTCAGTTGAGAACAATATGCCACGTTCAGCATCTTCAGAGAATGAGTGTGTTGATTCTTCAGGTTGTGCTGATGCTTTGAGCATCCATAACTTGCAAACAGTTGGTTCTAGGGTATCAAATCATGTTATCAACCCTGGTAGCACCTTGAAGTCAGCTGAAAGTAGATGTCTGCCAAGTACATTTGCTGATACTAAGTTAGTTTCTAGAACTGAAGAGCATTCGCATTATAATGCAAAATATGGGAATAATGGCATCCAATCTGGCACTGCTACCTCATCTCAGTTTGTTAGCTGTTCTCCAAATTCTAAGAATGGCCTGAAAGCATCTGTTCTTAAAGTTTCTGATCAATTTAGAGGATCAAAGTTGTCTAAACCCTTTCCATTAGCTGTTGGGAGTGATATTACTGGAAAATACAGTGACAAGGGTCTTTTTCCATATGATTTGTTTGTCAAGCTTTATAACTGGAACAGAGTGGAGTTGCAACCATTTGGTCTTATAAATTGTGGAAACAGCTGTTATGCTAATGCTGTACTCCAGTGCTTGGCATTTACACCACCCCTGACTGCTTATTTGCTTCAAGGACTCCATTCTAAATCATgtgcaaataaaaaatggtgtttCATGTGTGAGTTTGAAAGTTTGATTTTGAAGTCAAAAGACACAAAATCTTCCATCTCACCTGTGGGCATACTTTCTCAACTACAAAATATTGGGAGTCAACTTGGTAATGGAAGAGAAGAAGATGCACATGAATTTCTAAGGCTTGCTGTTGAGACAATGCAATCTGTTTGCCTTATGGAATCTGGGGATAACACATCAGACTCATTAAAAGAGGAAACTAATTTAATGGGCCTAACATTTGGAGGTTACCTTCAATCAAAGATAAAATGCATGAAATGTGGAGGGAAATCTGAGCGTCAAGAAAGGATGATGGATCTGACCGTTGAGATAGAAGGGGAGATAGCAACCCTGGAGGAGGCCCTTCAACAGTTTACAAACGCTGAGACTCTGGATGGAGAAAACAAGTACCACTGTGTCAGGTGTAAATCTTATGAGAAGGCCAAGAAGAAAATGACAGTTTTGGAGGCACCTAATGTTCTTACAATTGCATTAAAGAGATTTCAGTCAGGAAAATTTGGGAAGCTCAGTAAACCTATTCGGTTTCCTGAAATACTTGACATGGCACCTTTCATGAGTGGGACTAGTGATTTGCCTATATACAGGCTGTATGGGGTAGTTGTCCACCTGGATATAATGAATGCTGCCTTTTCGGGTCACTATGTGTCCTATGTTAAGAATTTCCAAAGCAGGTGGTTCAAGGTTGATGATAGTGTGGTGACAGTGGTTGAATTGGAAAGCGTCTTGGCAAAAGGAGCATACATGCTGTTTTATGCAAGGTGCTCACCTAGGGCCCCAAAAGTAATCAGGAACAGTATAGTATCTTCAGATTCAAAATGGAAACTCAATGGAAAAACTATTACAATGAAGTCAAGACGAGTATCTACAGTTTCTGGTGTTGGTGAATGCATAACTAGTTTGTCTTCTCCAGATGGTTCACCCTCCTTAGATACTATCTATTCGAAGTTTCACCACCACCCGAAAAGTATTTTGGAAGAAGACTCATCAAGTGATAATTCATCGCTCATCAGCAGCAATTCTGATGTAGGTTCTTGCAGTACAGATAGCACCAGTGATTCAACCAGTACTGAAGACTTTGCTGATTATGTTTTTGGTGATTTGGGACGTGGCTCAGGTGGCATGTTGAGAAATCCTGATTCCGACATTTCCTCTGCATTAAACTCTAGATATTTGCCCTCTTCTAATATAGACCCATATGATTCAGTTTTCCCACATTCAACTGGGTTCCAACCACCTCCCTCAGGTCCAAAGGGGGAGATAGACGGTCTTTTGTACAGGAGTAGACTAATGGATATTAAAAGGAGTGGGGGTGGTATTTCTCATTTTCATCCCGACACAAATATAGAGCATAGGAAGTTAGATACAAGTAGGAGTAGCAGTAGTTTTAGGGAGACTGACTCTATACAGAGAGCAGGATCCAGCCACTTAAATGATAGAAATTCTGGTGTATCATGTACAAAGTCAAGGGACAAAACGGATTGA 3162 0.4257 MRVTIDLGFWSLVLVAVVCVVAPAIGYAVSRRWRRAAARAEEIRRLLVLAEEESVRAETEASYQYGAVSVPKNRLCAVCYCPTTTRCARCKSVHYCSGKCQIVHWRQGHKAECRPASPTYQTDDLVSDLGKKVAEPDYSGIHDEKSQVESTEYTTSSEKPPLSDMSCSPDISPAKDDNVRVESLQEGNIKGSNSELSNNSFSGFSASTGASESSDDSSVCESVTSNEHERSVGHIFVEPTHDISDTTSSHNSIGESIPLSPKFASSVDSVDVYPAMHKLNQVRTGFGKEQSKFTSNGSSGLSMRKGATIEPSTVSSGFWNKTLDSAGIKNDSNSDPLPSQSDDCPPKSVENNMPRSASSENECVDSSGCADALSIHNLQTVGSRVSNHVINPGSTLKSAESRCLPSTFADTKLVSRTEEHSHYNAKYGNNGIQSGTATSSQFVSCSPNSKNGLKASVLKVSDQFRGSKLSKPFPLAVGSDITGKYSDKGLFPYDLFVKLYNWNRVELQPFGLINCGNSCYANAVLQCLAFTPPLTAYLLQGLHSKSCANKKWCFMCEFESLILKSKDTKSSISPVGILSQLQNIGSQLGNGREEDAHEFLRLAVETMQSVCLMESGDNTSDSLKEETNLMGLTFGGYLQSKIKCMKCGGKSERQERMMDLTVEIEGEIATLEEALQQFTNAETLDGENKYHCVRCKSYEKAKKKMTVLEAPNVLTIALKRFQSGKFGKLSKPIRFPEILDMAPFMSGTSDLPIYRLYGVVVHLDIMNAAFSGHYVSYVKNFQSRWFKVDDSVVTVVELESVLAKGAYMLFYARCSPRAPKVIRNSIVSSDSKWKLNGKTITMKSRRVSTVSGVGECITSLSSPDGSPSLDTIYSKFHHHPKSILEEDSSSDNSSLISSNSDVGSCSTDSTSDSTSTEDFADYVFGDLGRGSGGMLRNPDSDISSALNSRYLPSSNIDPYDSVFPHSTGFQPPPSGPKGEIDGLLYRSRLMDIKRSGGGISHFHPDTNIEHRKLDTSRSSSSFRETDSIQRAGSSHLNDRNSGVSCTKSRDKTD 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2496 1053 Pfam Ubiquitin carboxyl-terminal hydrolase 510 811 IPR001394 GO:0004843|GO:0016579
Ssu6g2496 1053 MobiDBLite consensus disorder prediction 1020 1043 - -
Ssu6g2496 1053 MobiDBLite consensus disorder prediction 996 1053 - -
Ssu6g2496 1053 Coils Coil 661 681 - -
Ssu6g2496 1053 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 511 526 IPR018200 GO:0004843|GO:0006511
Ssu6g2496 1053 Gene3D - 66 117 - -
Ssu6g2496 1053 MobiDBLite consensus disorder prediction 887 915 - -
Ssu6g2496 1053 Gene3D Cysteine proteinases 503 825 - -
Ssu6g2496 1053 Coils Coil 40 60 - -
Ssu6g2496 1053 MobiDBLite consensus disorder prediction 1004 1019 - -
Ssu6g2496 1053 MobiDBLite consensus disorder prediction 135 149 - -
Ssu6g2496 1053 MobiDBLite consensus disorder prediction 135 228 - -
Ssu6g2496 1053 ProSiteProfiles Zinc finger MYND-type profile. 76 113 IPR002893 -
Ssu6g2496 1053 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 21 1036 - -
Ssu6g2496 1053 MobiDBLite consensus disorder prediction 326 363 - -
Ssu6g2496 1053 Pfam MYND finger 76 113 IPR002893 -
Ssu6g2496 1053 SUPERFAMILY Cysteine proteinases 506 817 IPR038765 -
Ssu6g2496 1053 MobiDBLite consensus disorder prediction 883 915 - -
Ssu6g2496 1053 MobiDBLite consensus disorder prediction 185 226 - -
Ssu6g2496 1053 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 21 1036 - -
Ssu6g2496 1053 SUPERFAMILY HIT/MYND zinc finger-like 72 116 - -
Ssu6g2496 1053 ProSitePatterns Zinc finger MYND-type signature. 76 113 IPR002893 -
Ssu6g2496 1053 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 510 814 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2496 Ssu-Chr6 58858561 58866075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2496 446 832 Miscellaneous Gene Families AT4G31670 45.729 1.09e-118 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2496 K11855 - gmx:100782303 1583.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2496 6 58858561 58866075 Ssu6g2496 6 58858561 58866075 ECH